Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00681 | ATGTCTGGAAGAAATCGAGGACCACCCACCATCCCACTAAATGGTGTGCCTCACGGTGGACTACCACCTGTTCGCGATCCTCATTTTGGCAGAGGCCTTGGGCCAGTGCCACATCCAGCGCTTCTTGAGGAAATCAGAGAATCACAGTATGGGATGCATCCAGGATCCCTTCCTCCACACCCTGCAATGATAGAGGAGCGTCTTGCTGCACAACATCAAGATATTCAAGCTCTTCTTCTCGACAACCAGAGGCTAGCTGCTACCCATGTTGCCCTTAAGCAGGAACTAGAAGCAGCCCAGCACGAGTTGCAACGCATGGCTCATGTTGCTGATTCCTTACATGCAGAAAGGGACATTCAGATGAGAGAATTATATGAAAAATCAGTAAGACTAGAAGTTGATCTGCGAGGAGTTGAGACTATGCGAGCAGAGCTTCTTCAAGTTCATTCTGATGTCAAGGAATTAACTGTTGCAAGGCAGGAACTCACTGGTCAAGTACAAGCAATGTCACAAGATCTAACTAGAATGACTGCAGATTTGCAGCAGGTCCCCGCTTTGAAGGCAGAAATTGAAACTGTGAAGCAGGAATTACATCGTGCTAGCGTGTATATACTTTGCATATCAAGAGTTGCAATTGAGTATGAAAAGAAGGGATATGCGGAGAATTATGAACACGGTCAGGTTATGGAGAAGAAACTGGTTTCAATGGCTCGGGAGTTGGAGAAACTTAGAGCTGAGGTTTCTAATGCAGAGAAGAGAGCTCATGCTTCTGCTGCTGCTGTTGGAAATGCTGCTGCTGGGTACGGTACAAATTATGGCAATGCTGATGCTGGATATGCGGGAAATCCATATTCTTCGAGTTATGGCTTGAACTCCGTGCAGTCTGGTACCGATGGTTATCCTCCATATGGACCTGGATCTGTTCCCTGGGTTCAACAATGGAGCCACATGATGAATTTCAGTCAAGTTTGTGGGCCTTCCGTGATCGGCTTAATTTATGGCTATGAACCGATTTCAGATTGTACTAAGGTGGGTCGTATGAAAATGGCAGTCGGAGCTGAACTCCAAAATCCTCCATCTGAAATCCGAATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGGCTCAGATTCCTTCAAGAACAACAGCAACTGAACCCGCAAAATGAGGATCAATCGCTCCGTTCCTGTTCCCTTCCAGCGAAGAAGCGAAAGGAGTCTCGCGATTCATCATTGTTCTTTCTTCCAGACGCTACTTTGCCTCACCCAGCCCCCATTTCCGCTTCTTACTGCTTGCCAACCAAGAAGAGAGTGTGGGCGCTTCACCCTGATTTCCCCCCCGAGTCATTGGATCTCAATGTTGAATACAAGCCTCCTTCAGAGGAAGAAGAATCGGTACCGAAAACAGAATCAGTGAGAGAGAAAAATGAAGAGGACGAGGAAAGCGAAATTTCTGATGTTGAAGACGAAGACGATGGGATCCTCTGTGCGATTTGTCAAAGTACAGACGGAGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGCGATTTAATGGTACATTCTTCATGTTATGGCAATCCTCTGGCGAAGAGCGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCTAACACAGAGAAGAAGGTATCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTCAAAGGAGGGGCCATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAGGTGTTCTTCGAGGACCCAGATGGCAGAGAAGGAATTGATTGCTCATTGATTCTGAAGAGGAGATGGGAATCCAAATGTTACATCTGCAAAACTTCTAGAGGTTGTGCTATAGATTGCTCAGAGCCCAAATGCAATTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACAGAGAAGGAAGAAGATCTGGTGCCATTGTAGCTGGGTTCTGCAGAAACCACACCGACTTGTGGAAGAAGCAACAACTAACAGGAAAGTTCAAGATCGTGGCTCGAGATGAAGAAACACGAAAATCAAAATCAAAATCAATCGGACAATCAAAAGTGATGGCGGAGAAGAACAACACATCAAGATTCGGAGGTTCGATTTTGGTACCTTCCGTTCAAGAGTTGGTGAAACAGCCAATCATCGAAGTTCCATCTCGATACATCCGCCCCGATCTCCACTCCTTCCCGATCGTCTCCGCCGCTTCCGAAATCCCCGTTATCGAAATGTCGAACTTTCACTCCGACGCTTCAATGCACTCCGAATTGACTCGGCTTCATTCCGCTAGCAAAAATTGGGGATTCTTTCAGAGTGAAGAAGATGCAGAAGGATTTGGACAAGCTTTCGTTGTAAGTGAAGAACAGAAACTGGATTGGTGCGACCTTTTCTTCATCGCTACCGCGCCTCCACATCTCAGGAAACCGCGCTTATTTCAAAACCTCCCTCCCGCTTTCCGAAACACAATGGAGGAGTACTCGGCAGAGGTGAAGAATCTGGCGATGGCGATTTTCGAGCAATTTGAGAAAGCGTTGGGGATCAAAGATGGGGAGTTGACGGAGATCTTCAAGGATGGTAGTCAGTCGATGAGAATGAACTATTATCCTCCCTGCCCGAAGCCGGAGAAGGTGATCGGAATAACGCCGCACTCCGACGCCGTCGGCCTCACAATTCTGCTGCAAATCAACGAAATGGAAGGTCTGAAGATTAAGAAGGACGGGAATTGGGTTGCCGTGACGCCTCTCCCCAATGCGTTTATCGTCAACATCGATAATAACAAATGGGGAATACAAAAGCATAGAACACTGCGCCACGGTGAACGCAAAGAGGGAAAGGCTGTCCATAGCGACGTTCAACAACCCAAGTTTGGAGAAAGAGATAAGGCCAATTCCATCCCTACTTACGCCTCAGTCCCCTCCATTGTTTACAACTTTGACATACCAACAGTTCGTGAGGCTGCTCTTTTCTCGCAAACTAGACGGGAAGTCTCACCTCGACACCCTGCGCATTCACACTCCACCAACCTAATACCACATTCACTCCACGAGCACCCAAGAACGAAAAGCTTTCATCGTTTTCTATCCGTGCTATGGGCTCCTCCTCCTCTTCCCAGCGACCAGATGGTATCCGAGAGAGTATTGGAACACCAAAACGCCAGGGACTTACCAGTGCATATATCATCAACTAAATTTGACAGTGGAACTGGTTGGCCATCGTATTACCAGCCCATTGGTGATAATGTCAAAACCACGCTAGACCTGTCCATTATTTTCATGCCTCGAGAGGAGGTTCTTTGTGCTGCTTGTGATGCTCATCTAGGCCATGTATTTGATGATGGACCGCCCCCAACTGGGAAGCGTTACTGCATCAATAGTGCTGCACTGAAATTGAAGCCGAAATAA | 3453 | 47.23 | MSGRNRGPPTIPLNGVPHGGLPPVRDPHFGRGLGPVPHPALLEEIRESQYGMHPGSLPPHPAMIEERLAAQHQDIQALLLDNQRLAATHVALKQELEAAQHELQRMAHVADSLHAERDIQMRELYEKSVRLEVDLRGVETMRAELLQVHSDVKELTVARQELTGQVQAMSQDLTRMTADLQQVPALKAEIETVKQELHRASVYILCISRVAIEYEKKGYAENYEHGQVMEKKLVSMARELEKLRAEVSNAEKRAHASAAAVGNAAAGYGTNYGNADAGYAGNPYSSSYGLNSVQSGTDGYPPYGPGSVPWVQQWSHMMNFSQVCGPSVIGLIYGYEPISDCTKVGRMKMAVGAELQNPPSEIRMDSLHGLPPLKRLRFLQEQQQLNPQNEDQSLRSCSLPAKKRKESRDSSLFFLPDATLPHPAPISASYCLPTKKRVWALHPDFPPESLDLNVEYKPPSEEEESVPKTESVREKNEEDEESEISDVEDEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHSSCYGNPLAKSVPEGDWFCIQCLASSSSNTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSLILKRRWESKCYICKTSRGCAIDCSEPKCNLAFHVTCGLKEDLCIEYREGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEETRKSKSKSIGQSKVMAEKNNTSRFGGSILVPSVQELVKQPIIEVPSRYIRPDLHSFPIVSAASEIPVIEMSNFHSDASMHSELTRLHSASKNWGFFQSEEDAEGFGQAFVVSEEQKLDWCDLFFIATAPPHLRKPRLFQNLPPAFRNTMEEYSAEVKNLAMAIFEQFEKALGIKDGELTEIFKDGSQSMRMNYYPPCPKPEKVIGITPHSDAVGLTILLQINEMEGLKIKKDGNWVAVTPLPNAFIVNIDNNKWGIQKHRTLRHGERKEGKAVHSDVQQPKFGERDKANSIPTYASVPSIVYNFDIPTVREAALFSQTRREVSPRHPAHSHSTNLIPHSLHEHPRTKSFHRFLSVLWAPPPLPSDQMVSERVLEHQNARDLPVHISSTKFDSGTGWPSYYQPIGDNVKTTLDLSIIFMPREEVLCAACDAHLGHVFDDGPPPTGKRYCINSAALKLKPK | 1150 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3206548 | 3223602 | + | CmaCh09G006810.1 | Cma09g00681 | 300686 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00681 | 1150 | SUPERFAMILY | Mss4-like | 1071 | 1149 | IPR011057 | - | |
| Cma09g00681 | 1150 | SMART | PHD_3 | 495 | 544 | IPR001965 | - | |
| Cma09g00681 | 1150 | SMART | PHD_3 | 616 | 671 | IPR001965 | - | |
| Cma09g00681 | 1150 | MobiDBLite | consensus disorder prediction | 450 | 488 | - | - | |
| Cma09g00681 | 1150 | MobiDBLite | consensus disorder prediction | 1011 | 1030 | - | - | |
| Cma09g00681 | 1150 | CDD | PHD_BRPF_JADE_like | 495 | 543 | - | - | |
| Cma09g00681 | 1150 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 479 | 551 | IPR013083 | - | |
| Cma09g00681 | 1150 | SUPERFAMILY | FYVE/PHD zinc finger | 489 | 548 | IPR011011 | - | |
| Cma09g00681 | 1150 | PANTHER | PROTEIN FLX-LIKE 1 | 1 | 311 | - | - | |
| Cma09g00681 | 1150 | Pfam | 2OG-Fe(II) oxygenase superfamily | 878 | 943 | IPR044861 | - | |
| Cma09g00681 | 1150 | Gene3D | Peptide methionine sulfoxide reductase. | 1066 | 1150 | - | - | |
| Cma09g00681 | 1150 | MobiDBLite | consensus disorder prediction | 455 | 475 | - | - | |
| Cma09g00681 | 1150 | Coils | Coil | 226 | 260 | - | - | |
| Cma09g00681 | 1150 | Gene3D | - | 719 | 943 | IPR027443 | - | |
| Cma09g00681 | 1150 | ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 876 | 1051 | IPR005123 | - | |
| Cma09g00681 | 1150 | MobiDBLite | consensus disorder prediction | 384 | 403 | - | - | |
| Cma09g00681 | 1150 | Pfam | PHD-zinc-finger like domain | 561 | 657 | - | - | |
| Cma09g00681 | 1150 | PANTHER | PROTEIN FLX-LIKE 2 | 1 | 311 | IPR040353 | - | |
| Cma09g00681 | 1150 | Coils | Coil | 82 | 116 | - | - | |
| Cma09g00681 | 1150 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 556 | 673 | IPR013083 | - | |
| Cma09g00681 | 1150 | SUPERFAMILY | Clavaminate synthase-like | 721 | 940 | - | - | |
| Cma09g00681 | 1150 | Coils | Coil | 152 | 172 | - | - | |
| Cma09g00681 | 1150 | Pfam | SelR domain | 1071 | 1149 | IPR002579 | GO:0033743 | |
| Cma09g00681 | 1150 | ProSiteProfiles | Zinc finger PHD-type profile. | 493 | 546 | IPR019787 | - | |
| Cma09g00681 | 1150 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 559 | 671 | IPR034732 | - | |
| Cma09g00681 | 1150 | ProSiteProfiles | Methionine-R-sulfoxide reductase (MsrB) domain profile. | 1071 | 1150 | IPR002579 | GO:0033743 | |
| Cma09g00681 | 1150 | CDD | ePHD | 562 | 670 | - | - | |
| Cma09g00681 | 1150 | Pfam | PHD-finger | 496 | 544 | IPR019787 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02835 | Cma-Chr4:18946567 | Cma09g00681 | Cma-Chr9:3206548 | 1.49E-46 | dispersed | |
| Cma09g00681 | Cma-Chr9:3206548 | Cma03g01362 | Cma-Chr3:8664772 | 2.26E-69 | dispersed | |
| Cma12g00831 | Cma-Chr12:6150820 | Cma09g00681 | Cma-Chr9:3206548 | 6.30E-35 | dispersed | |
| Cma14g01662 | Cma-Chr14:12434520 | Cma09g00681 | Cma-Chr9:3206548 | 6.64E-13 | dispersed | |
| Cma15g00901 | Cma-Chr15:4636912 | Cma09g00681 | Cma-Chr9:3206548 | 2.50E-37 | dispersed | |
| Cma19g00499 | Cma-Chr19:5891708 | Cma09g00681 | Cma-Chr9:3206548 | 7.71E-17 | dispersed | |
| Cma01g01275 | Cma-Chr1:9187597 | Cma09g00681 | Cma-Chr9:3206548 | 0 | transposed | |
| Cma01g01272 | Cma-Chr1:9172201 | Cma09g00681 | Cma-Chr9:3206548 | 3.16E-179 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35625 | PF13832 | zf-HC5HC2H_2 | 7.30E-28 | CL0390 | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00681 | - | K11380 | csv:101203744 | 544.273 |