Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00683 ATGGATAGAGGCCAGGCTATAGCACTCTATGCCACGATCAGTTGTGTCGCTTTCATCGTGTCGAAGATCTTCATAGCATTGCTTCTTTACAAGCGCTGGAAAAGAAGACACATGATTTATGAAGATGGGATGTCAGGTGGGAAGATGGTCATGTTCAAGTCTCCAGCAACAAAGTCCCTGGAATCAGATGCGTTCCTGAAGAAAACACTAAAACTAAACAACAGGGACATCATTGGCTCTGGAGGCCATGGGACTGTTTACAAACTTGCACTAAGTGACTCCTTGACATTTGCTGTGAAAAGACTGAACAGAGGAAGTGCTGAAAGAGATCAAGGATTCGAGAGAGAATTGGAAGCGATGGGAGACATAAAGCATCGGAACATCGTCACGCTTCACGGATACTACACTGCTCCTCACTATAATCTCCTTATATATGAGCTAATGCCTAATGGAAGTTTGTATGAATATCTACATGGAAGATCAAAGGAGAAGGTTTTGGATTGGCCATCACGGTATAAAATAGCAGTAGGTGCAGCGAGAGGCCTATCGTACCTTCATCACGACTGCATCCCGCACATCATACATAGAGATATCAAGTCGAGCAACATATTGTTGGATCAAAACATGGACGCTCAAGTGTCCGACTTTGGATTGGCAACTCTGATGGAACCCAACAAGACTCATGTATCGACTATTGTGGCAGGCACATTTGGGTACTTGGCTCCAGAATACTTCGATACGGGGCGAGCAACGACAAAAGGAGATGTCTACAGCTTTGGTGTAGTACTACTCGAACTCTTAACAGGGAAAAAACCGACTGATGAAGCATTTATGGAAGAGGGAACTAAACTTGTGACGTGGGTGAAAACAGTTGTTCAGGAGAAAAGAGAAGAATATGTACTTGACAGAAGTTTGAGCTGTTTTCCAGTCGACGAGGTTAATGTCGTATTTAGCATTGCACTGAAGTGTCTTGAACCAGAACCTGCTCGGCGACCAACAATGGCAGAGGTAGTCAAAGTGCTTGAGCAGCTAAAGTCAAGTAGCATTGTAACAGATTGTGATCTCTAA 1068 43.91 MDRGQAIALYATISCVAFIVSKIFIALLLYKRWKRRHMIYEDGMSGGKMVMFKSPATKSLESDAFLKKTLKLNNRDIIGSGGHGTVYKLALSDSLTFAVKRLNRGSAERDQGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLYEYLHGRSKEKVLDWPSRYKIAVGAARGLSYLHHDCIPHIIHRDIKSSNILLDQNMDAQVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATTKGDVYSFGVVLLELLTGKKPTDEAFMEEGTKLVTWVKTVVQEKREEYVLDRSLSCFPVDEVNVVFSIALKCLEPEPARRPTMAEVVKVLEQLKSSSIVTDCDL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3227437 3229455 + CmaCh09G006830.1 Cma09g00683 300688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00683 355 PANTHER BNAA07G39120D PROTEIN 1 346 - -
Cma09g00683 355 ProSiteProfiles Protein kinase domain profile. 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00683 355 Gene3D Phosphorylase Kinase; domain 1 53 147 - -
Cma09g00683 355 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Cma09g00683 355 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 346 - -
Cma09g00683 355 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Cma09g00683 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Cma09g00683 355 SUPERFAMILY Protein kinase-like (PK-like) 69 342 IPR011009 -
Cma09g00683 355 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Cma09g00683 355 Pfam Protein kinase domain 75 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00683 355 SMART serkin_6 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00683 Cma-Chr9:3227437 Cma04g00586 Cma-Chr4:2970838 1.89E-102 dispersed
Cma01g01343 Cma-Chr1:9597494 Cma09g00683 Cma-Chr9:3227437 2.51E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68803 PF00069 Pkinase 2.40E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00683 - - cmax:111477061 703.745