Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00720 ATGTCAACTGTCGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGTGAATCTGATGAAGGAATAGTTGTCCGAGAATTCTGTGCAAATGGGGTATGCATAAAAACTACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCCCTCAATTTAGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGCAATGTTGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAGCGATTACAGCCTTCCATTGCTGAGAAGACTCCTCCAAAAAAAGGACGTTCACGCCCTGAATCTCAACAGGCAGTTTCACAACATGCTGCAAGCCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTACAGAAGCTAGGGAGGGTAAATGAGGCTGCTGATGAGTGTACGAGTGTCCTTGATGCCGTAGAAAAGATATTCCAACAAGGAATTCCTGATGCGCAAGTGGATGGTAGATTGCAAGAGACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAGTATCTGCCTATAGGCGTGCCCTCTTAAGCCAATGGAACCTCAATAATGAAAGCTGTGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTAATGCTTCTTGTGAAGAAATGTTACCTTTGTAAGATAAAGTGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCACATGCAGCCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGCGTAGATCGTTGGAAGTCTTTAGCTCTTTGCTATTGTGCAGCCGGACAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTGTCTACACAAACACGAAAAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGGTTTGTAGTGAGGATCCTTTTCTCTCTGCCGAAGGTGTTGGTTATGCCCAGCGAGCACTGAACAATTGTGTAGAAAACGAAGAGCATTTAAGGGGTGTGGGTCTTCGCTTGCTAGGCCTTTGTTTGGGAAAGCAAGCCAAAATGTCTTCCTCTGACTTAGAGAGGTCTCGTCTTCAGTCAGACGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGAAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTTTGCAATATGCAAAGAAGTTCATTGATGAAACAGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTCACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGGACCACTGCTTAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTATCGTTATCTTCTTGCGTTAGTTCAAGCGCAAAAGAAATCGTTTGGGCATCTCAGAATTGTCCCTCAGTCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAAGGAGCTGAAAGAGTTCTCCCCAGAAGTCTAATGTGTGAAGGAAGTGAGAAAATACAAGAAGCTCTAGCTGCTTATATAAATGCTATCCTACTCGAACCGACTTACGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCAAAAGCGGGCCCGGACGCATTGCCTATAGCGAGAAGCTTACTTTCGGATGCATTGAGATTAGATCCGACCAACCGTAAGGCTTGGTTTTACTTGGGGGTCATTCATAGGGACGAAGGACGAATGGCTGATGCTGTAGACTGCTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTGTTCTCTAA 2046 44.13 MSTVDEDDREPAMESGESDEGIVVREFCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNLEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSIAEKTPPKKGRSRPESQQAVSQHAASLVLEAIYLKVKSLQKLGRVNEAADECTSVLDAVEKIFQQGIPDAQVDGRLQETVSQAVELLPELWKQAGCFQEAVSAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMLLVKKCYLCKIKWDPSVMEHLIFALSTCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKCLHKHEKPDDVAALLLAAKVCSEDPFLSAEGVGYAQRALNNCVENEEHLRGVGLRLLGLCLGKQAKMSSSDLERSRLQSDALKSLEAASGLERNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGHLRIVPQSFTLERCRDMSRKSKGAERVLPRSLMCEGSEKIQEALAAYINAILLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAVDCFQAAAMLEESDPIESFSSVL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3420603 3426871 + CmaCh09G007200.1 Cma09g00720 300725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00720 681 PANTHER PROTEIN NPG1 568 680 IPR043376 -
Cma09g00720 681 PANTHER PROTEIN NPG1 13 550 IPR043376 -
Cma09g00720 681 Pfam Tetratricopeptide repeat 624 666 - -
Cma09g00720 681 Gene3D Tetratricopeptide repeat domain 39 265 IPR011990 GO:0005515
Cma09g00720 681 SUPERFAMILY TPR-like 315 515 IPR011990 GO:0005515
Cma09g00720 681 MobiDBLite consensus disorder prediction 1 20 - -
Cma09g00720 681 Gene3D Tetratricopeptide repeat domain 316 547 IPR011990 GO:0005515
Cma09g00720 681 PANTHER CALMODULIN-BINDING PROTEIN 568 680 - -
Cma09g00720 681 PANTHER CALMODULIN-BINDING PROTEIN 13 550 - -
Cma09g00720 681 SUPERFAMILY TPR-like 442 663 IPR011990 GO:0005515
Cma09g00720 681 ProSiteProfiles TPR repeat profile. 639 672 IPR019734 GO:0005515
Cma09g00720 681 Gene3D Tetratricopeptide repeat domain 566 676 IPR011990 GO:0005515
Cma09g00720 681 SMART tpr_5 315 348 IPR019734 GO:0005515
Cma09g00720 681 SMART tpr_5 569 602 IPR019734 GO:0005515
Cma09g00720 681 SMART tpr_5 471 504 IPR019734 GO:0005515
Cma09g00720 681 SMART tpr_5 639 672 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01732 Cma-Chr2:9733140 Cma09g00720 Cma-Chr9:3420603 0 dispersed
Cma06g01307 Cma-Chr6:8641597 Cma09g00720 Cma-Chr9:3420603 6.95E-169 dispersed
Cma09g00720 Cma-Chr9:3420603 Cma19g00105 Cma-Chr19:634173 0 dispersed
Cma01g01327 Cma-Chr1:9469586 Cma09g00720 Cma-Chr9:3420603 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00720 K21843 - csv:101206641 1159.05