Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00736 ATGGCTAAACCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCATACTCCGGCTCTGGTTCCCGCTCCAGTTCCCGCTCGCGCTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTATCACGAAGCGGTACTTCTCGAAGCCGAAGCCCCGCTCCTCAAAGAAAGAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCATCTCCACTAGCTAAACGAATTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATCCACTGAGTAGGAATGTCCATGAGGGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTTCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGAATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCAAGGCGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGTACACCGCCTCGACGTGCTCGTAGTCCTCCAAGAAGGTCTCCAGTAGTTCGCAGAAAGAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCACGGAGGTGCCCAGGAGAGTATATCGCAGTCCAAGAAGGAGTAAAAGTTGGGAAAGCGCCATTTCGGACAGAAACGCACCAAATGGAAGGGGAGAAAAACGGCGCATACTTCTTGCTTGATTTTGATCTTTCGCTCAGCTGCTGTCAGGAACACAGGGCAAGTGACTTGCTCCGGCGACTAAGGAATACTCGTCATATTCAGAATGAGCAGAGTTTCTTGAATTGA 1272 52.12 MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGTSRSRSPAPQRKSPNETARRTRASSPLAKRISPPPRKPSPVRESLVLHIDPLSRNVHEGNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQRQKIPTPPRTVATASKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRKSRSPIRRPARSRSRSSSPRRCPGEYIAVQEGVKVGKAPFRTETHQMEGEKNGAYFLLDFDLSLSCCQEHRASDLLRRLRNTRHIQNEQSFLN 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3500142 3507709 - CmaCh09G007360.1 Cma09g00736 300741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00736 423 MobiDBLite consensus disorder prediction 242 266 - -
Cma09g00736 423 MobiDBLite consensus disorder prediction 10 84 - -
Cma09g00736 423 MobiDBLite consensus disorder prediction 306 345 - -
Cma09g00736 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 178 IPR000504 GO:0003723
Cma09g00736 423 MobiDBLite consensus disorder prediction 200 225 - -
Cma09g00736 423 CDD RRM_RNPS1 109 174 IPR034201 -
Cma09g00736 423 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 352 - -
Cma09g00736 423 PANTHER BNAA09G56240D PROTEIN 1 352 - -
Cma09g00736 423 SMART rrm1_1 108 174 IPR000504 GO:0003723
Cma09g00736 423 MobiDBLite consensus disorder prediction 1 105 - -
Cma09g00736 423 SUPERFAMILY RNA-binding domain, RBD 95 190 IPR035979 GO:0003676
Cma09g00736 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 172 IPR000504 GO:0003723
Cma09g00736 423 MobiDBLite consensus disorder prediction 176 354 - -
Cma09g00736 423 Gene3D - 66 185 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00736 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 - csv:101216970 256.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01306 Cma09g00736 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00736 Cma-Chr9:3500142 Cma01g01162 Cma-Chr1:8472072 1.70E-09 dispersed
Cma01g01306 Cma-Chr1:9342762 Cma09g00736 Cma-Chr9:3500142 2.58E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008093 2 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00736 Cma_Chr09 FPKM 17.042877 17.672112 15.962879 15.914841 52.314461 47.201038 46.524937 16.031488 16.396357 15.665223