Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00739 ATGGCTAGAACAGCTTGCTTTCACATTATTCCTTCTCTTCTTCTCCCCTCCAAATCCTCCTTCTTCGGAACTCCCTCACTCTTCTCCAGAGCTTCTCATTTCGACCGTGTTATGGTGGTTGGCCGACGCTTCTCTTCTTCTTCCAAGATCAGCATGAGCCTCAGAGCCGGAATTGTTGGCCTCCCCAATGTTGGAAAATCCACTCTCTTCAATGCCGTCGTCGAAAATGGCAGGGCCCAAGCTGCCAACTTTCCTTTCTGTACAATAGAGCCAAATGTAGGAGTAGTTGCAGTTCCAGATCCCCGTCTCCATAAACTTTCTGAGCTCAGCAAGTCTCAGCGAGCGGTCCCAGCATCGATAGAATTTGTAGATATTGCTGGGTTAGTGAAAGGAGCCAGTCAAGGAGAGGGATTGGGAAATAAATTTTTATCCCATATTCGCGAGGTGGACTCCATACTTCAGGTTGTGCGCTGTTTTGAAGACAATGACATTGTTCATGTCAATGGGAAAATTGATCCAAAAACTGATATCGATGTGATTAACTTAGAGCTTGTTTTTTCAGATCTGGACCAGATTGAGAAAAGATTAGAGAAGCTCAAGAAAGGCAAGGCAAGGGATTCACAGTCTAAAGTCAAGGAAGAAGCCGAGAAATCTGCATTGGAAAAAATTCAGACGGTCCTTATGGATGGGAAACCAGCCCGATCAGTAACTTTAACAGATTTTGAAAAGGATGCTATAAAGCATCTTTGCCTGCTCACAATGAAACCGGTCATATATGTGGCCAATGTTGCAGAATCTGATCTAGCGGAGCCTGCAAGTAATCCTCATGTTGAAGAAGTTATGAGTCTTGCTTCAGAGTTGCAATCTGGAATAGTGACAGTTTCTGCACAGGTTGAGTCTGAGCTTTCTGAACTTCCGTCAGAAGAAAGGGTCGAATATTTAAAATCTCTTGGTGTAAGTGAAAGTGGCCTGGGAAATCTTATAAGGGCAACCTATAACCTTTTGGGACTCCGTACGTATTTTACTTCGGGTGAAAAGGAAACAAAAGCCTGGACCATACTATCAGGAATGACTGCACCACAAGCTGCTGGAGTCATTCACTCGGACTTTGAGAGAGGGTTCATTCGCGCAGAGACGGTGGCTTATGACGATTTTGTTGCTGCGGGTTCATTTGCTGCAGCAAGGGAGAAAGGACTTTTGAGAGCTGAGGGTAAAGAATATATTGTGCAGGAAGGGGATGTCATGCTCTTTCGTTTCAATGTTTAG 1266 44.55 MARTACFHIIPSLLLPSKSSFFGTPSLFSRASHFDRVMVVGRRFSSSSKISMSLRAGIVGLPNVGKSTLFNAVVENGRAQAANFPFCTIEPNVGVVAVPDPRLHKLSELSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKIDPKTDIDVINLELVFSDLDQIEKRLEKLKKGKARDSQSKVKEEAEKSALEKIQTVLMDGKPARSVTLTDFEKDAIKHLCLLTMKPVIYVANVAESDLAEPASNPHVEEVMSLASELQSGIVTVSAQVESELSELPSEERVEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILSGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFAAAREKGLLRAEGKEYIVQEGDVMLFRFNV 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3523098 3531937 - CmaCh09G007390.1 Cma09g00739 300744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00739 421 PANTHER OBG-LIKE ATPASE 1 52 421 - -
Cma09g00739 421 Gene3D - 100 420 IPR012675 -
Cma09g00739 421 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 314 IPR031167 GO:0005525
Cma09g00739 421 Coils Coil 182 209 - -
Cma09g00739 421 PANTHER OBG GTPASE FAMILY 52 421 - -
Cma09g00739 421 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Cma09g00739 421 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Cma09g00739 421 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Cma09g00739 421 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Cma09g00739 421 CDD YchF 56 335 IPR041706 -
Cma09g00739 421 Gene3D - 54 336 IPR027417 -
Cma09g00739 421 Hamap Ribosome-binding ATPase YchF [ychF]. 53 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cma09g00739 421 Pfam Protein of unknown function (DUF933) 337 420 IPR013029 -
Cma09g00739 421 Gene3D - 165 255 IPR023192 -
Cma09g00739 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 359 IPR027417 -
Cma09g00739 421 CDD TGS_YchF_OLA1 335 419 IPR013029 -
Cma09g00739 421 TIGRFAM TIGR00092: GTP-binding protein YchF 52 421 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cma09g00739 421 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Cma09g00739 421 SUPERFAMILY TGS-like 337 418 IPR012676 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00739 K19788 OLA1; obg-like ATPase 1 - csv:101217443 755.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01304 Cma09g00739 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00739 Cma-Chr9:3523098 Cma20g01111 Cma-Chr20:8754100 1.17E-06 dispersed
Cma13g00490 Cma-Chr13:5248843 Cma09g00739 Cma-Chr9:3523098 1.66E-90 transposed
Cma01g01304 Cma-Chr1:9322797 Cma09g00739 Cma-Chr9:3523098 1.92E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00739 Cma_Chr09 FPKM 3.227586 2.949983 5.336738 4.655189 27.435976 23.102213 27.748262 5.16754 5.300651 5.38893