Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00749 ATGGGAAGTGCAGTGCCGCTACAGTTGCATTCCATCGGGCGGGGGGCAATGAGGCTAAGCATATCTCGTGCATATCTCGCAGCCCCTCATCGCGTCAGGCCGAGTCGATCCATTTGCTCTTCTTCCTCAAAACCTCGAATCCCATTGTTTTTAAGGCCTCCCAATTACTCCGCCACACTCACAGATCTTCAGAAATGGCACGATTGGGCCAAAACCCTAAGTTCTTCAGTTGGTTCATCCTTTGTGGACGCCGACAACGGTCCAGACTCCGCCCTCTTACACAGAGAGCTCAAATGGCTGGTAGAAGATGCCGTTGAAGATAAATCGATAAGTTCTGAACTGCGAACTAATTCCGAGCAAAATCATGAACATAATCTTAGAAATGTGAGGTTAAAAGTAGGAATCGAGGAACTCTACAGGCTTTGGAAGCAGAGGATCCATGAAAGGAGACCGTTCCAATACATTGTTGGGTGCGAGCACTGGAGGGATTTGATTTTGAGTGTAGAAGGAGTTCTGATTCCGAGGCCGGAGACGGAGGTTTTGGTGGATTTGGTGGCGGAAGTGGTCTCTGATAATGAAGCGCTCAGAGAAGGGTTCTGGGTTGATTTGGGCACTGGAAGTGGTGCAATTGCTATTGCGATTTGTAGGGTTTTGGAGGGTCGTGGTAGAGTCATAGCCACTGATTTAAGCCCCACTGCGCTTACGGTTGCTGGCTACAACGTTCAGAGGTATGGATTACAGGAGTTGATCGAGTTAAGGCAAGGATCATGGTACAAGCCATTAAGGGACGTCGTGGGAAAGCTATCTGGGATTATTAGTAATCCTCCGTACATACCCAGTGATAATATTGTTGGCCTACAAGCTGAGGTTGGTAAGCATGAGCCTAGAGTTGCATTGGATGGAGGCACTAATGGCATGGATGAGCTTATACATCTATGTGATGAAGCTGCTGTAATGTTGAAACCTGGTGGTTTCTTTGCTTTTGAGACAAACGGTGAAGATCAGAGCAAGTATCTTGTGAAGTACGTGGAAGACAATCACAGAGGGAGGCTTTGTGATCTGAAAATAGTGTCTGATTTTGCGGGCATTCCAAGATTCATAACTGGATTCCTCAATGAGCCTCTATAA 1128 46.99 MGSAVPLQLHSIGRGAMRLSISRAYLAAPHRVRPSRSICSSSSKPRIPLFLRPPNYSATLTDLQKWHDWAKTLSSSVGSSFVDADNGPDSALLHRELKWLVEDAVEDKSISSELRTNSEQNHEHNLRNVRLKVGIEELYRLWKQRIHERRPFQYIVGCEHWRDLILSVEGVLIPRPETEVLVDLVAEVVSDNEALREGFWVDLGTGSGAIAIAICRVLEGRGRVIATDLSPTALTVAGYNVQRYGLQELIELRQGSWYKPLRDVVGKLSGIISNPPYIPSDNIVGLQAEVGKHEPRVALDGGTNGMDELIHLCDEAAVMLKPGGFFAFETNGEDQSKYLVKYVEDNHRGRLCDLKIVSDFAGIPRFITGFLNEPL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3585886 3589570 - CmaCh09G007490.1 Cma09g00749 300754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00749 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 345 IPR029063 -
Cma09g00749 375 Gene3D Vaccinia Virus protein VP39 168 371 IPR029063 -
Cma09g00749 375 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 271 277 IPR002052 GO:0003676|GO:0008168|GO:0032259
Cma09g00749 375 PANTHER - 28 370 - -
Cma09g00749 375 CDD AdoMet_MTases 201 280 - -
Cma09g00749 375 Pfam Methyltransferase small domain 196 277 IPR007848 GO:0008168
Cma09g00749 375 TIGRFAM hemK_fam: methyltransferase, HemK family 105 373 IPR004556 GO:0006479|GO:0008276
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00749 K02493 hemK, prmC, HEMK; release factor glutamine methyltransferase [EC:2.1.1.297] - csv:101217233 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00749 Cma16g00463 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013686 1 1 1 0 0 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00749 Cma_Chr09 FPKM 8.681818 9.795897 6.539572 7.251576 20.333996 22.050367 19.352448 9.665145 9.170229 9.065657