Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00768 | ATGGGAAGGGGAAAGATTGAAATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTATTCAAAGAGAAGAAATGGTATCATCAAGAAGGCCAAAGAGATCACTGTTCTTTGTGATGCTCAAGTATCTCTTGTGGTGTTTGCTAGCTCTGGCAAAATGCATGAGTATTGTAGCCCTTCTACGCCGTTGATTGATATCTTGGATAAGTATCATAAGCAATCGGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATTTAAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCGTCTGAGAGGAGAAGATATAACGTCTTTGAACTACAAGGAGCTAATGGCTCTTGAAGAAGCCCTTGAAAATGGCCTTACTGGCGTTCGTGAGAAGCAGTCGGAGCTCATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAAACCAAGCGCCTCAATTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATAATCAAAGGATGAGAGATTTCAATTCTCAAATGCCTTTTGCGTTCAGAGTGCAGCCCATTCAGCCAAATCTACAAGAAAGGAACAATTAA | 642 | 41.12 | MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEETKRLNYELYQKEMVAMGDSVREMDNGYNNQRMRDFNSQMPFAFRVQPIQPNLQERNN | 213 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3703771 | 3706709 | - | CmaCh09G007680.1 | Cma09g00768 | 300773 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00768 | 213 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma09g00768 | 213 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | PANTHER | FLORAL HOMEOTIC PROTEIN PISTILLATA | 1 | 211 | - | - | |
Cma09g00768 | 213 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 211 | - | - | |
Cma09g00768 | 213 | Coils | Coil | 135 | 155 | - | - | |
Cma09g00768 | 213 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Cma09g00768 | 213 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | Coils | Coil | 77 | 111 | - | - | |
Cma09g00768 | 213 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma09g00768 | 213 | Gene3D | - | 13 | 100 | IPR036879 | GO:0003677|GO:0046983 | |
Cma09g00768 | 213 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01365 | Cma09g00768 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01941 | Cma-Chr1:12594843 | Cma09g00768 | Cma-Chr9:3703771 | 9.09E-45 | dispersed | |
Cma09g00125 | Cma-Chr9:538248 | Cma09g00768 | Cma-Chr9:3703771 | 8.73E-41 | dispersed | |
Cma09g00768 | Cma-Chr9:3703771 | Cma14g01149 | Cma-Chr14:9050926 | 3.47E-34 | dispersed | |
Cma01g01365 | Cma-Chr1:9719667 | Cma09g00768 | Cma-Chr9:3703771 | 3.58E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35630 | PF01486 | K-box | 6.40E-17 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00768 | K09264 | - | csv:101222239 | 395.586 |