Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00768 ATGGGAAGGGGAAAGATTGAAATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTATTCAAAGAGAAGAAATGGTATCATCAAGAAGGCCAAAGAGATCACTGTTCTTTGTGATGCTCAAGTATCTCTTGTGGTGTTTGCTAGCTCTGGCAAAATGCATGAGTATTGTAGCCCTTCTACGCCGTTGATTGATATCTTGGATAAGTATCATAAGCAATCGGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATTTAAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCGTCTGAGAGGAGAAGATATAACGTCTTTGAACTACAAGGAGCTAATGGCTCTTGAAGAAGCCCTTGAAAATGGCCTTACTGGCGTTCGTGAGAAGCAGTCGGAGCTCATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAAACCAAGCGCCTCAATTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATAATCAAAGGATGAGAGATTTCAATTCTCAAATGCCTTTTGCGTTCAGAGTGCAGCCCATTCAGCCAAATCTACAAGAAAGGAACAATTAA 642 41.12 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEETKRLNYELYQKEMVAMGDSVREMDNGYNNQRMRDFNSQMPFAFRVQPIQPNLQERNN 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3703771 3706709 - CmaCh09G007680.1 Cma09g00768 300773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00768 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma09g00768 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma09g00768 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma09g00768 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma09g00768 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma09g00768 213 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g00768 213 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Cma09g00768 213 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 211 - -
Cma09g00768 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 211 - -
Cma09g00768 213 Coils Coil 135 155 - -
Cma09g00768 213 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cma09g00768 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma09g00768 213 Coils Coil 77 111 - -
Cma09g00768 213 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g00768 213 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Cma09g00768 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01365 Cma09g00768 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01941 Cma-Chr1:12594843 Cma09g00768 Cma-Chr9:3703771 9.09E-45 dispersed
Cma09g00125 Cma-Chr9:538248 Cma09g00768 Cma-Chr9:3703771 8.73E-41 dispersed
Cma09g00768 Cma-Chr9:3703771 Cma14g01149 Cma-Chr14:9050926 3.47E-34 dispersed
Cma01g01365 Cma-Chr1:9719667 Cma09g00768 Cma-Chr9:3703771 3.58E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35630 PF01486 K-box 6.40E-17 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00768 K09264 - csv:101222239 395.586