Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00770 ATGTTGAAGCCGAAGCCGTTCGCTGGAGCCAATGTGTTCGTGTCCCGCAATCTTGTCGCTCCGGAGATATTCGACGCTCTTCACGACGCTTTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGTGATCCTGCTCGAAACGGCCCTAAAGATTATCATGTTATCTCATCAGCCGATCACGAAAAGTTTGAGGATCTTCGTTCGAAGGGATGCAATTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGAACAGACCCCTTCCTCAGCAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAAATTCTTGCATCTGGTTTTCAGGCAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCAGACGAGAGCATCTGCAGATGTCAGCTTTGTCATCGCGAAGAATGCTTTGGCTGCAAAATACAAGTGGGCACTTAACATTTCAAAGAAACCTATTGTCTCAATTGCTTGGTTACAGCAGTGCTGGATTGAACATCGTGTAGTGCCACAGGATGGATATCGAGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCCGCAGATGAGCGCAAGGAGATCGAAAAGCTTATCTTGCAAAATGGAGGAAGATATTCTGCCGATCTTACAAGAAAGTGTACACATTTGATATGTACTCCTGAAGGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGTTAGAAGAGCATGTCTTAATGAGGAGTTGTACCCTGTTGGTAGCGTTTCTGCAACTTCAAATAAAATGGCTAGGGGTTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTAATGGGAACGTGCAAGCTGTACAGTCCTCATTTATTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACGTCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCTGTTACAATGGCAAAGAACGAAGAAAACACTGAAAATTGCATTGCAAATGACTTCCAATCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCCGGTACATGCTGTTCAACGACAAGTTAACACACATAATTGTTGGAAATCCATCAGAAATGGAGAAAAAAGAGGTTAGAGACATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCCGTTCTTGGCAGACACATGGCCTATGATGAACTTATCCCTAAAGCATCCTGTAAAACAAGCACCATTGTTATGGATCGGAATAAAGTTCCTAATGTTCATCCAATCATGCCATTGAATGGGTTAGAAGGAAATATTCATGCTAAAATTGGAAAGACATCAATGATAGAGGAAAAAATTCTAGAAAAAAGTGAAGCAAATGTGGGTGGAGACAAGACCACAAAATTGTCTCAGAAAAGCCAACATTCTGTACCAAATGGTATGAACAAGAGTCAAGAAAAGTTGCGGTGCGATGTCGTGGTTCCAAATGGGAAGTCATCATGTGTGTATAAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAAGTGGTTGAGGATCATACGAAACAGAAAGTGCACTTCACAGTTGGATGTCATGGTGTGATACCAAGGAGTACAGATGTTCATACTACATACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGTTTGTCGGATACCAATGAGCACATTCTCTATTCTCCACTTCCTTGTTGTGTTCCTTTGCCTGGGTTTGAAAGAATACGTTTCTGTGTTTCACAATATGAAGACAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTCGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAATTACAGCTGAATGGATCTATGAGTGTGTCAGACAGAGTAAGCTTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGATAGAGAGGCAGGCTTATGTACTGTCAGTCAGTTTCCTACACAAGCTGGCCAAATGATAGCCGGTGAAGGTGAATCCCAGTTCCCTACCCATTCTGCTATCTTGAGAGATCAATCAGCTGGAACTAACAGTAGCTCTATGGGAGAAGTTGAACAAATAAGTTTTACTAACAAAAAGCGGAAATTCCTTGACGAACCTATACAAAAACGTCCTATATTTGTTGGAAACAGTCTCACTCATTTTGACTGCAATTTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTTGCTGCCGCGATTGAGGACTTGTTGGAGCAGACGAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTATTTTCCTGCCCGACTGTTCCGTCATTGGTCAAGACCATTCAGAAGCTCCTCCAGTTGGTGGTTCATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAAGAAGACGTCAGCGATCCTACTACTGGAGATGGGTGTGCAGGGGCATATGATGGTTTTAGTGAAACGCAAACCGAATCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAAGGCAAATGCTCATAGACAGAGTACGAACCCGGAGTAGCATGATTTGA 2910 42.34 MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADHEKFEDLRSKGCNLLGPQCVMSCAKENRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVNAMGGVLQTRASADVSFVIAKNALAAKYKWALNISKKPIVSIAWLQQCWIEHRVVPQDGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLICTPEGDKYKVARTWGHINIVTRKWFDQSIVRRACLNEELYPVGSVSATSNKMARGCLTAHNSQEKVNGNVQAVQSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVDVEVPVTMAKNEENTENCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLGRHMAYDELIPKASCKTSTIVMDRNKVPNVHPIMPLNGLEGNIHAKIGKTSMIEEKILEKSEANVGGDKTTKLSQKSQHSVPNGMNKSQEKLRCDVVVPNGKSSCVYKGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHTKQKVHFTVGCHGVIPRSTDVHTTYVSSHWVRSCLEDGCLSDTNEHILYSPLPCCVPLPGFERIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSITAEWIYECVRQSKLVSLDLYRPKEVTAQDREAGLCTVSQFPTQAGQMIAGEGESQFPTHSAILRDQSAGTNSSSMGEVEQISFTNKKRKFLDEPIQKRPIFVGNSLTHFDCNLNSTRETTSKSSVVTSHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKSIFLPDCSVIGQDHSEAPPVGGSSNQWLKRAERKEDVSDPTTGDGCAGAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMI 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3715225 3723336 + CmaCh09G007700.1 Cma09g00770 300775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00770 969 SUPERFAMILY BRCT domain 625 746 IPR036420 -
Cma09g00770 969 MobiDBLite consensus disorder prediction 914 936 - -
Cma09g00770 969 MobiDBLite consensus disorder prediction 527 546 - -
Cma09g00770 969 ProSiteProfiles BRCT domain profile. 662 745 IPR001357 -
Cma09g00770 969 CDD BRCT_TopBP1_rpt2_like 186 257 - -
Cma09g00770 969 CDD BRCT 103 170 - -
Cma09g00770 969 Gene3D BRCT domain 185 272 IPR036420 -
Cma09g00770 969 CDD BRCT_TopBP1_rpt2_like 660 735 - -
Cma09g00770 969 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Cma09g00770 969 Gene3D BRCT domain 97 184 IPR036420 -
Cma09g00770 969 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cma09g00770 969 SUPERFAMILY BRCT domain 374 458 IPR036420 -
Cma09g00770 969 Gene3D BRCT domain 660 752 IPR036420 -
Cma09g00770 969 Gene3D BRCT domain 352 460 IPR036420 -
Cma09g00770 969 SUPERFAMILY BRCT domain 568 651 IPR036420 -
Cma09g00770 969 MobiDBLite consensus disorder prediction 524 546 - -
Cma09g00770 969 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 957 - -
Cma09g00770 969 ProSiteProfiles BRCT domain profile. 182 270 IPR001357 -
Cma09g00770 969 Pfam twin BRCT domain 190 252 IPR001357 -
Cma09g00770 969 Pfam twin BRCT domain 666 727 IPR001357 -
Cma09g00770 969 Pfam twin BRCT domain 103 166 IPR001357 -
Cma09g00770 969 SMART BRCT_7 374 454 IPR001357 -
Cma09g00770 969 SMART BRCT_7 184 260 IPR001357 -
Cma09g00770 969 SMART BRCT_7 659 735 IPR001357 -
Cma09g00770 969 SMART BRCT_7 564 639 IPR001357 -
Cma09g00770 969 SMART BRCT_7 97 174 IPR001357 -
Cma09g00770 969 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Cma09g00770 969 Gene3D BRCT domain 559 655 IPR036420 -
Cma09g00770 969 ProSiteProfiles BRCT domain profile. 562 649 IPR001357 -
Cma09g00770 969 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Cma09g00770 969 Gene3D BRCT domain 32 94 IPR036420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01009 Cma-Chr5:8103295 Cma09g00770 Cma-Chr9:3715225 3.38E-07 dispersed
Cma09g00770 Cma-Chr9:3715225 Cma14g00805 Cma-Chr14:4072139 9.19E-06 dispersed
Cma09g00770 Cma-Chr9:3715225 Cma17g01040 Cma-Chr17:7515392 2.28E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00770 K10728 - csv:101212525 1630.15