Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00787 ATGGCTATGGCGATGGCGTCCGCCATTTCTCTCTGCTTCGTTACTCTTTTTGCCTTACATTCTTCTTTCTTCGTGCTCACAGTTGCTGCGACGTCCGATAACCCGGAGTTCGTCGTCGAGTTGGACCGTTCTAACTTCACCGACTTCGTAAGCAAGCTCGATTTCCTTATCGTCTCCTTCTACACTCCGGGATGTGGACATTGTAAGAGGCTGGCACCGGAGTATGAAAAAGCTGCTAATATTCTGAGTAAGCATAATCCTCCTTTGACTTTAGCAAAGGTTAATATTTTCAATGAAGCAAATGATGGACTTGCTGGATCCGACGGCACAATTTCTATCAAGATTGTGAGAGAGGGAGGTAAGAATGTTCAAGAGTACAAGGGCCCTCTTGATGCAGATGGTATTGTTGAGTACGTGAAGAGACAGTATGGGCCTGCCTCTGTTGAAATAAACACTCTGGAGGATGCCCAAAATTTCATATCTGACAATAAGATTGCTATTGTTGGCATATTCCCTCAATTTTCTGGGGAGGAGTTTGAAAACTATACTATCCTAGCCAAGAAATTGCGTCCTACTGAAGAATTTTTTCATACTTCAGATGCCAAACTTCTTCCGCGTGATAAATCATCTGTCACTGGTCCCTTAATGAGGGTGCTCAAGCCATTCGATGAGCTCTTTGTTGATACTCAGGATTTTGACGTGGATTCCCTCGAAAAATTTGTTCAGAAATCAATTGTACCTACGGTAACTATCATGGATGGTGACAAGAACAATCAACGTCTAGTTGATAATTTCATGTATAATTCAAATTCAAAGGTCATGTTGTTTATAAATTTTAGCAGTGAGATTGCTGCTTCCTTTGAATACAAGTATCGTGAACTGGCTTTGCTATACAAAGGAGATAGCCTCAGTTTTCTGATGGCAGATATTGATGCTAGTTTGCATGCGATTAAGCAATATGGAGTTAAGGATGGTCAAATACCCTTTATTATCCTACTAAGTGATAAAACAAAGTATCTGAAATCCAATGTGGAGCCTGATGAACTTTCTCCTTGGTTGAAAAGATATAAGAATAGAGAATTGGAACCATACATAAAATCTGAACCTATACCAGAGCATAATGACGAGCCTGTGAAAGTGGTGGTAGCTCACACATTTCAGGACATAGTTTTCAAATCAACTAAGAATGTTCTGCTCGAGTTTTATGCTCCTTCGCATAAAGCCTGCAAACAGCTGGCTTCAGTCTTTGAGGATCTTGCCATAGCATATCGAAGTGATCCTGATGTCATAATTGCTAAATTCGATATTTTTGCAAATGATTTACTACATGACTTCGAGATCTGGACACTCCCTACTATTTACTTCAAGTCAGCTGATGGGAACATTTCACGATACACCGGGTATGCAACAAAGAAAGACTTGAGAGATTTCATTGAAAAGAATAGGTCGAAAGCTGCTGATGAACATTCGGATTTAAAGGATGAGCTCTAA 1491 40.31 MAMAMASAISLCFVTLFALHSSFFVLTVAATSDNPEFVVELDRSNFTDFVSKLDFLIVSFYTPGCGHCKRLAPEYEKAANILSKHNPPLTLAKVNIFNEANDGLAGSDGTISIKIVREGGKNVQEYKGPLDADGIVEYVKRQYGPASVEINTLEDAQNFISDNKIAIVGIFPQFSGEEFENYTILAKKLRPTEEFFHTSDAKLLPRDKSSVTGPLMRVLKPFDELFVDTQDFDVDSLEKFVQKSIVPTVTIMDGDKNNQRLVDNFMYNSNSKVMLFINFSSEIAASFEYKYRELALLYKGDSLSFLMADIDASLHAIKQYGVKDGQIPFIILLSDKTKYLKSNVEPDELSPWLKRYKNRELEPYIKSEPIPEHNDEPVKVVVAHTFQDIVFKSTKNVLLEFYAPSHKACKQLASVFEDLAIAYRSDPDVIIAKFDIFANDLLHDFEIWTLPTIYFKSADGNISRYTGYATKKDLRDFIEKNRSKAADEHSDLKDEL 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3818045 3822330 + CmaCh09G007870.1 Cma09g00787 300792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00787 496 Gene3D Glutaredoxin 28 133 - -
Cma09g00787 496 Gene3D Glutaredoxin 134 238 - -
Cma09g00787 496 PANTHER PROTEIN DISULFIDE ISOMERASE 13 493 - -
Cma09g00787 496 ProSitePatterns Thioredoxin family active site. 57 75 IPR017937 -
Cma09g00787 496 ProSiteProfiles Thioredoxin domain profile. 356 483 IPR013766 -
Cma09g00787 496 CDD PDI_b_family 147 243 - -
Cma09g00787 496 Gene3D Glutaredoxin 239 372 - -
Cma09g00787 496 Pfam Thioredoxin 378 480 IPR013766 -
Cma09g00787 496 Pfam Thioredoxin 38 140 IPR013766 -
Cma09g00787 496 ProSiteProfiles Thioredoxin domain profile. 17 144 IPR013766 -
Cma09g00787 496 PANTHER PROTEIN DISULFIDE-ISOMERASE 13 493 - -
Cma09g00787 496 Gene3D Glutaredoxin 373 486 - -
Cma09g00787 496 CDD PDI_b'_family 258 357 - -
Cma09g00787 496 SUPERFAMILY Thioredoxin-like 38 145 IPR036249 -
Cma09g00787 496 CDD PDI_a_family 39 139 - -
Cma09g00787 496 SUPERFAMILY Thioredoxin-like 263 375 IPR036249 -
Cma09g00787 496 SUPERFAMILY Thioredoxin-like 148 247 IPR036249 -
Cma09g00787 496 SUPERFAMILY Thioredoxin-like 343 483 IPR036249 -
Cma09g00787 496 TIGRFAM ER_PDI_fam: protein disulfide isomerase 38 490 IPR005792 GO:0003756
Cma09g00787 496 Coils Coil 475 495 - -
Cma09g00787 496 Pfam Thioredoxin-like domain 171 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00787 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - csv:101217662 840.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00787 Cma-Chr9:3818045 Cma13g00172 Cma-Chr13:1319491 2.28E-30 dispersed
Cma15g00670 Cma-Chr15:3201173 Cma09g00787 Cma-Chr9:3818045 5.08E-175 wgd
Cma04g02370 Cma-Chr4:16418820 Cma09g00787 Cma-Chr9:3818045 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014530 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 3 2 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00787 Cma_Chr09 FPKM 1.891863 2.203693 2.470676 3.10843 8.35105 8.397476 9.336404 5.794961 5.700259 7.141568