Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00796 ATGGCGTCTGCTTTCAGTGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCCGCTGCAGCTCTTGTATTCTCATGCATGGGTGCTGCTTATGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGCGGCCAGAGCTCGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGATTGATCATTGCTGTTATTATTAGTACTGGAATAAACCCGAAAGCGAAATCTTACTATTTGTTTGATGGGTATGCTCATCTGTCTTCTGGACTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAATGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTCGCCGAAGCTCTCGCCCTCTATGGTCTTATTGTCGCCGAGGATTTCGAAGGGACAGCCATGGCGAGTACAAACCCTATAGCAGGATCTGGAACCAACGCTCCGAAGATAATCTGGAATGAAGCCCAACGGAGGTTCGAAACAGAGGACAAGAAGGCTTATCTTCAGTACGTGATCAAAAATCAAGGTAAAGTCATTGATATGATTCACACTTTCGTTCCTTCTTCCAAAAGGGGTTTGGGATTGGCTTCTCATCTCTGCGCCGCCGCCTTCAATCATGCCGCCGCTCATTCCTTGGCCGTCGTTCCCTCTTGTTCTTACATTTCCGACACCTTTCTCCCGAGGAATCCAACTTGGAACCATCTTTTATACTCTGAAGACAAGAAATCAAACCTAATGGACTTGGCCTCCAAATTTCTTCGCACTTTAACCAATGCCACCAACAATAATACCTTAATCAACGTCTGTTTGGTCATTTCCTTTGGCGCATTGAGCGCAAGATCAATCAAGCAGCAGCGGGAAATCGAAGCCCTGGAGGCTGAGAAAGATTCACTTCTCAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATACTCTGAAGCCTCAACAGACTCCGCTTTGATCCCTCTCGCCAGGATCAAAGCTATCTATAGCGAAGCTCCGGTATCCCCGTCCGGAGCAGAACAAGCTGCAACGGGAGATGCAAATTCACAAGGCTCCAAACTCATGCTGCTAAACCATTTTCTCAGGTCCCAACTACGCTCAATTGAGCGTTTTCCAATTCCGAATTCAGGTGGAGGTTTTTTGTTAAATCGGAATTTCGGTGTGATTGGGATTTCGCGGTCGGTCATTCGGTCATCTGAGAAATTGGATTTTAAATTTCCTCTAACAGTGTCTTGCATTCACTTCATCTGCTCCGCCATTGGAGCGTATATAGCGATTAAAGTGTTGAAAGTTAAGCCGCTGATTTCTGTTGACCCTCAAGATCGGTGGAGAAGGATATTCCCCATGTCGTTTGTGTTTTGTATCAACATAGTTTTGGGGAATGTGAGCTTGCGTTATATTCCGGTTTCTTTCATGCAGACAATAAAGTCCTTCACTCCTGCAACAACCGTTGTCTTACAATGGCTTGTATGGAGAAAGTACTTTGACTGGAGAATATGGGCATCTTTGATACCCATTGTTGGAGGAATTCTTCTTACTTCTGTGACTGAGATGAGCTTTAACATGTTTGGGTTCTGTGCTGCCTTGTTTGGTTGTTTGGCTACCTCAACAAAGACCATCCTTGCTGAGTCCTTATTGCATGGATACAAGTTCGACAGCATAAATACAGTGTATTACATGGCGCCGTTCGCGACCATGATCTTGGCAGTACCTGCAATGCTCCTTGAAGGTAACGGTGTTCTCGATTGGCTTCACACTCACGAGTCAATTTCCTCGTCACTCATCATCATTTTCAGCTCTGGGGTGATGGCTTTCTGTCTTAACTTCTCCATATTTTATGTGATTCATTCTACCACTGCTGTGACGTTCAATGTTGCTGGAAACCTAAAGGTAGCTGTTGCTGTTCTTGTTTCATGGTCGATATTTCGAAACCCGATTTCAATGCTAAATGCAGTTGGATGTGCAATTACACTTCTGGGTTGTACATTCTATGGCTATGTAAGACATCTTATCTCACAGCAGCCACCCGGAACCCCTCGAACCCCTAGAACACCTCGGACCCCTCGGAGTCGGATGGAGCTGCTCCCCCTTGTAAATGATAAATTGGATGATACGGTCTAA 2220 45.72 MASAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVAEDFEGTAMASTNPIAGSGTNAPKIIWNEAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGLGLASHLCAAAFNHAAAHSLAVVPSCSYISDTFLPRNPTWNHLLYSEDKKSNLMDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKALKKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPSGAEQAATGDANSQGSKLMLLNHFLRSQLRSIERFPIPNSGGGFLLNRNFGVIGISRSVIRSSEKLDFKFPLTVSCIHFICSAIGAYIAIKVLKVKPLISVDPQDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLIPIVGGILLTSVTEMSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPFATMILAVPAMLLEGNGVLDWLHTHESISSSLIIIFSSGVMAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWSIFRNPISMLNAVGCAITLLGCTFYGYVRHLISQQPPGTPRTPRTPRTPRSRMELLPLVNDKLDDTV 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3874415 3891358 + CmaCh09G007960.1 Cma09g00796 300801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00796 739 SUPERFAMILY Multidrug resistance efflux transporter EmrE 462 548 - -
Cma09g00796 739 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
Cma09g00796 739 Pfam GCN5-related N-acetyl-transferase 185 260 IPR031165 -
Cma09g00796 739 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma09g00796 739 Pfam ATP synthase subunit C 97 152 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma09g00796 739 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cma09g00796 739 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma09g00796 739 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma09g00796 739 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma09g00796 739 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma09g00796 739 PANTHER GDP-MANNOSE TRANSPORTER GONST5 432 724 - -
Cma09g00796 739 Gene3D - 11 159 IPR035921 -
Cma09g00796 739 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 175 263 IPR016181 -
Cma09g00796 739 Gene3D - 443 553 - -
Cma09g00796 739 Pfam Triose-phosphate Transporter family 437 697 IPR004853 -
Cma09g00796 739 SUPERFAMILY F1F0 ATP synthase subunit C 87 152 IPR035921 -
Cma09g00796 739 ProSiteProfiles Yjdj-type Gcn5-related N-acetyltransferase (GNAT) domain profile. 175 263 IPR031165 -
Cma09g00796 739 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 152 - -
Cma09g00796 739 Gene3D - 169 271 - -
Cma09g00796 739 Coils Coil 307 334 - -
Cma09g00796 739 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cma09g00796 739 PANTHER SOLUTE CARRIER FAMILY 35 432 724 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00796 Cma-Chr9:3874415 Cma12g00424 Cma-Chr12:2199287 2.99E-96 dispersed
Cma01g01394 Cma-Chr1:9873181 Cma09g00796 Cma-Chr9:3874415 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00796 K15285 - csv:101217984 567.385