Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00799 | ATGGGTGCTGACACTGCCCTTGCAATGTTTTGTGGTCTCATTCATAAAATTAAACCCTACTTAGCTATGATCTCCTTGCAATTCGGCTACGCCGGGATGTACATCGTTACCATGCTTTGTTTCAAAAAGGGTATGAACCATTACGTTCTTGCTGTGTATCGACACGTCGTTGCTACCGTTGTCATTGCTCCATTCGCTTTCGTCCTCGAAAGGAAAATAAGGCCAAAGATGACATTCCCGATCTTCGCTCGGATATTGGCCCTCGGCTTTCTCGAGCCTGTGTTGGATCAAAATTTGTACTATGTGGGTCTGAAACTTACCTCAGCAACATTCACCTCTGTCACCATCAATATTCTTCCTGCTGTTACCTTCATTATGGCTCTCATTTTCAGGCTAGAAAGAGTGAACTTCAAGAAGGTTCGTAGCATTGCGAAGGTGGTCGGAACATTGGTGACGATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCCATCGTCGACATCTTCCACGGCCAAGGACGCCACGCCGCCCACCAAAGCAGCGGCAGCGAATCCTCCGACCAGCACTGGGTCCTCGGCACTCTCATGCTCCTCGGCAGCATCGTCGGTTGGTCCGGCTTCTTCATCTTGCAATCGTTCACACTGAAGAAATATCCAGCGGAGCTATCGTTGACCGCCTTGATATGTGTTGCCGGCACGGTTGAGGGCTCCATTGTTACCCTTATTATGGAGCGCGACTTGAGCGTCTGGGTCATCGGCTGGGACTCTCGGCTTCTCGCCGCCGTTTATACCGGTGTGATATGCTCTGGACTAGCATATTACATACAAGGCGTGGTAATTCGTGAACGTGGCCCTGTTTTTGTTACCTCTTTTACCCCTCTCTGTATGATTATTACCGCCATCCTTGGCTCCATTGTTTTGGCCGAGCAAATTCACCTCGGAAGCATAATCGGAGCCATTTTCATAGTGATGGGATTATACTTAGTGGTATGGGGCAAAGCCAAGGACCATATAAACAAACCGACGAACCAAAAAAGTGGCGCCGCCACCGAATTACCGATCACCGCCGAGCCGGAGACAACCACCACCGCCGTCGCCGCCGAGCGTTGCTCTTCCAAGGCTCCACCGGCGTGA | 1137 | 50.57 | MGADTALAMFCGLIHKIKPYLAMISLQFGYAGMYIVTMLCFKKGMNHYVLAVYRHVVATVVIAPFAFVLERKIRPKMTFPIFARILALGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLERVNFKKVRSIAKVVGTLVTIGGAMVMTLYKGPIVDIFHGQGRHAAHQSSGSESSDQHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICVAGTVEGSIVTLIMERDLSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAILGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHINKPTNQKSGAATELPITAEPETTTTAVAAERCSSKAPPA | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3899192 | 3901755 | - | CmaCh09G007990.1 | Cma09g00799 | 300804 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00799 | 378 | PANTHER | WAT1-RELATED PROTEIN | 13 | 357 | - | - | |
| Cma09g00799 | 378 | Pfam | EamA-like transporter family | 21 | 147 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma09g00799 | 378 | Pfam | EamA-like transporter family | 193 | 331 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma09g00799 | 378 | PANTHER | WAT1-RELATED PROTEIN | 13 | 357 | IPR030184 | GO:0016021|GO:0022857 | |
| Cma09g00799 | 378 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 53 | 162 | - | - | |
| Cma09g00799 | 378 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 251 | 335 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00964 | Cma-Chr7:4659149 | Cma09g00799 | Cma-Chr9:3899192 | 5.97E-132 | dispersed | |
| Cma09g00799 | Cma-Chr9:3899192 | Cma18g00826 | Cma-Chr18:7215575 | 2.12E-124 | dispersed | |
| Cma15g01342 | Cma-Chr15:8415672 | Cma09g00799 | Cma-Chr9:3899192 | 8.57E-90 | dispersed | |
| Cma15g01429 | Cma-Chr15:9058282 | Cma09g00799 | Cma-Chr9:3899192 | 8.58E-81 | transposed | |
| Cma01g01391 | Cma-Chr1:9854965 | Cma09g00799 | Cma-Chr9:3899192 | 0 | wgd | |
| Cma04g02354 | Cma-Chr4:16332522 | Cma09g00799 | Cma-Chr9:3899192 | 2.06E-142 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00799 | - | - | csv:101216002 | 658.292 |