Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00806 ATGCAGGATGTAGTCCCGCATGTAAGCCCAAATCAAGGGAGGCTATTTTCTTGGCAGGCGCTTGACGCAGCCCCCGAATTTATAATGGGGATACAATGCACTTGGACTCTCCAGCGGGTTCAATTTAGGCCTTCCGTTTTGTTCCGGTGTATTAATACTAATCCAAGACCAAATTCTCTTCGCGCATCTGTTTTCGCCACCATGTCCACCGTTTCCACTGAGAAGAGCGTCGATTCCGACCAGAAAGGATCGAACAACGACACTCAGAAGCTATTGCAGGTTTCGAATCGGCTTGAAAAGTTCAAAACAACCATTTTCACTAGAATGAGTAACTTAGCGATCCAGTATGGGGGAATAAACCTCGGCCAAGGCTTCCCGAACTTTGACGGTCCCGAATTTGTAAAGGAAGCAGCAATTCAAGCCATCAAGGACGGGAAAAATCAATACGCTCGTGGATATGGAGTGCCAGATTTGAACTTGGCCATTGCTGAGCGATTCAAGAAGGACACTGGACTTGTGGTCGACCCCGAGAAGGAAGTTACCGTTACCTCCGGGTGCACCGAGGCAATTGCTGCAACCATGCTTGGCTTAATAAATCCTGGTGATGAGGTGATCCTTTTTGCTCCTTTTTATGATTCTTATGAAGCCACTCTATCAATGGCTGGTGCCAAAATCAAATGCATCACGTTACGCCCTCCAGATTTTTCGATCCCTATAAATGAGCTCAGGTCTGCAATCTCAAAGGATACTCGAGCAATTCTTATGAACACGCCCCACAACCCAACGGGAAAAATGTTCACGAAGGATGAATTGAACGAGATTGCTTCTCTCTGCATCGAGAACGATGTGTTAGTTTTTTCGGATGAAGTTTATGACAAGTTATCTTTCGAAATGGACCACATTTCCATAGCCTCTCTTCCAGGAATGTACGAGCGCACCGTTACGATGAATTCATTAGGAAAAACATTCTCCCTCACCGGTTGGAAGATCGGGTGGGCGATCGCTCCACCTCACTTGACATGGGGCGTTCGACAGGCACACGCTTTCCTTACTTTCGCTACCTCCACTCCAATGCAGTCAGCTGCTGCTACAGCTCTCCGAGCACCCGATTCTTACTACGAGGAGCTGAAGAAGGATTACATGGCAAAGAAAGCCATTTTAGTAGAGGGACTGAATGCAGTTGGGTTCAAGGTGTTTCCATCAAGCGGAACCTACTTTATCATCGTCGATCACACCCCTTTCGGGCTGAAGAACGACGTCGAGTTTTGCGAGTATCTGATCAAAGAAGTTGGGGTTGTTGCTATTCCGACGAGTGTGTTCTACCTAAACCCAGAAGATGGGAAGAATCTAGTGAGATTTACATTCTGCAAAGATGAGAACACACTGAGGGCGGCGGTGGAGAAGATGAAGGAGAAGCTAGTTAGGAAGTAA 1431 46.96 MQDVVPHVSPNQGRLFSWQALDAAPEFIMGIQCTWTLQRVQFRPSVLFRCINTNPRPNSLRASVFATMSTVSTEKSVDSDQKGSNNDTQKLLQVSNRLEKFKTTIFTRMSNLAIQYGGINLGQGFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDLNLAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFSIPINELRSAISKDTRAILMNTPHNPTGKMFTKDELNEIASLCIENDVLVFSDEVYDKLSFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSTPMQSAAATALRAPDSYYEELKKDYMAKKAILVEGLNAVGFKVFPSSGTYFIIVDHTPFGLKNDVEFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDENTLRAAVEKMKEKLVRK 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3934457 3938409 - CmaCh09G008060.1 Cma09g00806 300811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00806 476 Gene3D Aspartate Aminotransferase, domain 1 108 469 IPR015422 GO:0003824
Cma09g00806 476 Pfam Aminotransferase class I and II 118 468 IPR004839 GO:0009058|GO:0030170
Cma09g00806 476 PANTHER FI04487P 95 474 - -
Cma09g00806 476 CDD AAT_like 119 471 - -
Cma09g00806 476 Gene3D - 131 369 IPR015421 GO:0003824
Cma09g00806 476 SUPERFAMILY PLP-dependent transferases 93 471 IPR015424 -
Cma09g00806 476 PANTHER FI04487P 95 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00806 K23977 GTK; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117] - csv:101217124 827.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00091 Cma-Chr2:452173 Cma09g00806 Cma-Chr9:3934457 3.53E-26 dispersed
Cma02g00092 Cma-Chr2:456111 Cma09g00806 Cma-Chr9:3934457 2.37E-19 dispersed
Cma09g00806 Cma-Chr9:3934457 Cma11g00676 Cma-Chr11:3270641 1.13E-13 dispersed
Cma04g00797 Cma-Chr4:4079505 Cma09g00806 Cma-Chr9:3934457 1.34E-50 transposed
Cma06g01689 Cma-Chr6:10398947 Cma09g00806 Cma-Chr9:3934457 5.59E-11 transposed
Cma09g01142 Cma-Chr9:6476356 Cma09g00806 Cma-Chr9:3934457 6.47E-15 transposed
Cma17g00829 Cma-Chr17:6510064 Cma09g00806 Cma-Chr9:3934457 8.79E-17 transposed
Cma17g01051 Cma-Chr17:7564013 Cma09g00806 Cma-Chr9:3934457 3.92E-99 transposed
Cma01g01229 Cma-Chr1:8871906 Cma09g00806 Cma-Chr9:3934457 8.26E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g293 . . . Bda03g00529 . . . Bma01g02642 . . . Cma09g00806 . . . Cpe06g00641 . . . . . . . . . . . . . . . Cone4ag1388 Cone7ag1547 . . Lsi04g02378 Csa04g01815 . . . . . . . . . . . . Cmo09g00799 . . . Car09g00722 . . Bhi09g02655 . . . . . . Cla11g01524 Cam11g1584 Cec11g1613 Cco11g1614 Clacu11g1741 Cmu11g1559 Cre11g1975 . . Chy07g00661 Cme07g00869
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007070 1 2 2 1 0 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00806 Cma_Chr09 FPKM 61.133537 70.445045 143.553909 143.029022 69.372169 72.122719 70.065994 520.339783 514.090332 485.648438