Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00813 ATGGATTTCCAGGATGATGGCTTTGAGGGATCTCCAAATGAAGAGATTATCTTTAAGGAAGTTTTCTTTGGGAACGGTGCTAGTCGTTCCAATGAGAGGTGTCCTCGCGATGCATTTGGTTATGAACATGGGCTTTGTAAGATTAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCGACGGTGTCCAGTCATTTATACTCGAGGAATATAAAGCTCGATGAATGTTACAATGCTACTGAGAATATTAGGACGAGTTCTGCTCCTAATAGTTTTCCATGCAAATGGATTCCAGTGGAAGGAAATGATGAGAATGCATGTGTCAAACGAATGAAACGTTCACCTGATGAACGTTCTGATTCTGTACCTGAGCTAGTTATGGTTATGAAATCATCAGATATTAGAGGAGAACCTGTTTCCACTAGTTGCTGTCCGGCTGAGGTTTGTGATTCTGAATCATTTACGTTTCACATTGTAGAATCGTCTAGACGGGGTATTATTTCAAGTTGCTATCTGCTAAAGCACTTTGTAGAAAGAGACAGTAACCGGGGTGAACCCGATGCCTCCAAACGAACATCGTTAAATTTAGAAGGTAATGATGAACCGAGTATGGTGGATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTTGCAAGTCCTTCTAATAACGAGCAGTTCGGATCTCCACTACAACTGGTGGTAGGACAAATGAAACTTCAATGTCCAGAACTGGACACTTCGTTGATGACAGATTTGAAAAGAGATCCCCGTCCTCTTCTCCACTATCATGTCGTTCACCTATTTATTGCAGCTGGATGGTCTATCGAAAGGGTCAAAAGACCTTGTAGGCGTTATATGGAAACAGTTTATAGATCACCCCAGGGAAGGACGATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTCCTCTTTGCTGATAGATGTAGTTTCGTTAAGGAAGTTGGCAGCAAGGAATGGACTGGCATTCATCAATTCTTGTTTGATCTTTCTGACACGTTGTTACAGGTCGGGAAGGAAATGAATCAATTAGGAGGTACAACTTCATTGGCTCATTGCTGGGTTATTCTAGATCCCTATGTGGTAGTTGTGTTCATTTACCGAAAGATCGGTACACTTAGGAAGGGAGATTTAGTTAGAGCTACTTGTAGTATTGGGGTTAATGGGAACAATAAGACCGATACTTTTGTGACATTAACAAATGAAGATAGTAGTATTTGTAGTCTATCTGCTGACAAAAGTGCATCACCGCTACGTGAACAATCACCATCTGCCAAGAGTGCATTGACAGAAGCCGTGTTAAAAGATCTTGATGGAGGCAATTGTGCTTTTGATGAACAAACCTGTGATACAATTTTCTCGAATTACTACGGGCATACAGAAGATGGAACAATGAAACTTTCGACAAGGGTGTCTAATTATGTCCCCAGTTTGGCGAATGTTCCAAATTGCACGGGCAGTCATTGCAATGAAACTGGATGCAAGATAGACAGTGAGGATTTAACTTGCAAACCTAGATGTCTGGCGGACTGTCCTGTTCCATCTGGAAATTCAGACAATGTTGTCAGAATTTCTGGCACTACATCTCCTGATGAGGATAGTACATTGCATTGTTTGGATGAACACAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAATTGGTGAAAAATGTACTAACATGTTCCCTAGGAGAAGAAAAAAAAGTGGAAGTCCCACTCGATGATAAGGCGGAAAATAGTTTGGAAGAATCTCTGAATGACTATTCAAACTATACAAGTGATGACCTATCCCATTCTTGTGCCTCAGGGGTTGTAGAGAAGTCGACACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCGTCAAAGTTCAAAACAGAGAATAAAGTTTCTGCCATACATTCTACTTTGAAGAAGAAAGGGCGTCGAAAATGTAAAAAGATATCTGAAATTAACCCTACCTTGCCACCGCAGATCAATATTGTGAGTACGACTCCAGGAAAGAAAACTGATTGCACTCAGTTGGACATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAACGTGGACAGTCATGAGAAGAGCTCGTTTCTCAGTCCTATTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGAAATTTGACAGTCTTAGAGGTTCAAAAACCAGAAAGAAGAAATTGAATGAATGTCAAATTGAAGATGACGACCTATTAGTTTCGGCCATAATTAGAAACAAAGATGTCAACTCAAGCGCTATCGGATTTTCCCATATAAGAAAATACTTAAAATCTAGAGCAAAAATGAACTGCAAAAGTCAAAAGAGGAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCGATTGGGGCTAGAACAGTATTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGATATAATCCAATACCAAAGCCCCAAGGATGACAGTGTGGTTAAATATGGTAGAATCACTGGAGACGGCATCATCTGCAATTGCTGCAGTGAGCTACTCACAATATCTGAATTTAAATGTCATGCCGGTTTCAAATTTAATCGCCCATGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGACAAGTAAAACCCGAACAGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGCGATGGTGGAGAGCTAATATGCTGTGATAATTGCCCCTCCACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGTTTAAACTGTACTTGCCGGACATGTGGTGGTCTGGTGAATTATGAAGAGACTTCAAGTTCTTCTGATGCACTAAAATGTTCCCAGTGCGAGCAAAAGTGGATAATCCGTTACTGGATTTCCTTGAGAAATCGACAAAGCGTTCCTAAGACGATTTACGCTGGTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAACGGGTTTTCATGGATGCTTCTTAGATGCATTCATAATGAACAGAAAATTCTGTCTACCTCACGCTTAGCTATGATGGCAGAGTGCAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTATCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGGTACATGGATCAGAACTGGCCGAGATGCCCCTGATTGCAACGTGTAGTAAATATCGTCGCCAGGGAATGTGTAGGCGCCTACTGAATGCTATAGAAGAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTAGAGACATGGACTGAAGGTTTTGGGTTCATACCTGTGGAAGATGATGAGAAACATAGTCTTCACAGAACGGAAATGAAACGTTTAATGTATCAAGAATTGCAAGAACAGAATGGTGAAAAGACGATGGACGATTGCGAAGGGAATCCAGCTCCGATGAGTCCATCGACAACAACAAATGAAATGGATACTTGTTCAGGACAGAAATCTATTCAGTCTGTACAAGAACAATCTGATGGAAAGTGTTGCACTGACGAAGTTGGTGCAGCAAGCGAAACACACATCCACGAGGGGAATGAATCGTTAGAAGTAGAAGTCGTTGGCACGGAACGTGACGTTCAGCTTTCAGAAGGAAAGAGCTGGGATGGAGTTCGTGCAGTCGGTATGACGGGATTTGTAGAACCTGGTGTTCAAACTTTTAGATCATCGGTGCTCCTTCTCTGCTCTTGTCTCCTCTTCGGCATTTCCGGTTTCATCTTCGGACTGACCTCTTTTTTCACTCCTCGCCTCGGATATAGTTGTTCCAACCGTGTGCCGACGACTGTCAAAGTTGTTTGGGACAGAGCGGCCGGTTCTGGTGGTGGTGCTGGAGGAACTGGTAGCGATGTGAAGCGCTATAAAGTGATGGGGTTTGTGGGGATCCAAACTGGGTTTGCATCTGCTGGTCGGCGGCGATCTTTGAGGAAGACATGGTTGCCTTCTGATCGGGAAGGGCTTCAACGGTATCGTTTCTATCTTGTTCGTGATTCAAATTGTTGA 4185 42.15 MDFQDDGFEGSPNEEIIFKEVFFGNGASRSNERCPRDAFGYEHGLCKINDASLCSSSELSTVSSHLYSRNIKLDECYNATENIRTSSAPNSFPCKWIPVEGNDENACVKRMKRSPDERSDSVPELVMVMKSSDIRGEPVSTSCCPAEVCDSESFTFHIVESSRRGIISSCYLLKHFVERDSNRGEPDASKRTSLNLEGNDEPSMVDKVSASPVSQESSMTRLLVASPSNNEQFGSPLQLVVGQMKLQCPELDTSLMTDLKRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETVYRSPQGRTIREFSKAWRVCGELLFADRCSFVKEVGSKEWTGIHQFLFDLSDTLLQVGKEMNQLGGTTSLAHCWVILDPYVVVVFIYRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLTNEDSSICSLSADKSASPLREQSPSAKSALTEAVLKDLDGGNCAFDEQTCDTIFSNYYGHTEDGTMKLSTRVSNYVPSLANVPNCTGSHCNETGCKIDSEDLTCKPRCLADCPVPSGNSDNVVRISGTTSPDEDSTLHCLDEHSSENQVEKPNELVKNVLTCSLGEEKKVEVPLDDKAENSLEESLNDYSNYTSDDLSHSCASGVVEKSTQNEEGGLHFSASKFKTENKVSAIHSTLKKKGRRKCKKISEINPTLPPQINIVSTTPGKKTDCTQLDMIEDQKSHIADTKNVDSHEKSSFLSPISCHSERKGSKFKKKFDSLRGSKTRKKKLNECQIEDDDLLVSAIIRNKDVNSSAIGFSHIRKYLKSRAKMNCKSQKRSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCSELLTISEFKCHAGFKFNRPCLNLFLDSGRPFMLCQLQAWSTEYKTRTSKTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRTCGGLVNYEETSSSSDALKCSQCEQKWIIRYWISLRNRQSVPKTIYAGLQSRLGLINQFANGFSWMLLRCIHNEQKILSTSRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKVHGSELAEMPLIATCSKYRRQGMCRRLLNAIEEVKKLVIAAIPSLVETWTEGFGFIPVEDDEKHSLHRTEMKRLMYQELQEQNGEKTMDDCEGNPAPMSPSTTTNEMDTCSGQKSIQSVQEQSDGKCCTDEVGAASETHIHEGNESLEVEVVGTERDVQLSEGKSWDGVRAVGMTGFVEPGVQTFRSSVLLLCSCLLFGISGFIFGLTSFFTPRLGYSCSNRVPTTVKVVWDRAAGSGGGAGGTGSDVKRYKVMGFVGIQTGFASAGRRRSLRKTWLPSDREGLQRYRFYLVRDSNC 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3977043 3986673 + CmaCh09G008130.1 Cma09g00813 300818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00813 1394 PANTHER INCREASED DNA METHYLATION 1 2 1179 IPR031086 -
Cma09g00813 1394 Pfam Tify domain binding domain 852 902 IPR032308 -
Cma09g00813 1394 SMART PHD_3 929 970 IPR001965 -
Cma09g00813 1394 MobiDBLite consensus disorder prediction 181 213 - -
Cma09g00813 1394 PANTHER PHD FINGER FAMILY PROTEIN 2 1179 - -
Cma09g00813 1394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 913 1013 IPR013083 -
Cma09g00813 1394 Pfam PHD-finger 930 971 IPR019787 -
Cma09g00813 1394 ProSiteProfiles Zinc finger PHD-type profile. 927 972 IPR019787 -
Cma09g00813 1394 SUPERFAMILY FYVE/PHD zinc finger 908 970 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00813 - - - bhj:120086236 2058.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01243 Cma09g00813 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00340 Cma-Chr8:1940676 Cma09g00813 Cma-Chr9:3977043 1.38E-85 dispersed
Cma08g01143 Cma-Chr8:7048416 Cma09g00813 Cma-Chr9:3977043 7.50E-87 dispersed
Cma09g00813 Cma-Chr9:3977043 Cma17g01186 Cma-Chr17:8208913 1.35E-83 dispersed
Cma01g01243 Cma-Chr1:8938531 Cma09g00813 Cma-Chr9:3977043 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35633 PF16135 TDBD 1.10E-15 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00813 Cma_Chr09 FPKM 5.778255 7.116004 8.588272 8.872127 11.325324 10.536316 11.613524 4.126047 3.134276 3.745535