Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00822 ATGACCTACTGTAACAACCACATACTTTCTTCCCTCCTTCAAATTCCCAACTCCCCACTGAGCCATTTCTCTCGTTTCTCTTCTCACAGTCGCCGTATTTTCTTTCAAGGTCCAACAATGTCTACATCTGCTGTAAAAATTGTTGCGGAGTACGCCAAGTCGAATCGTTCCACATGCAAGAACTGCTCCAAAACCATTCCTGCAAAGGCACTGAGGTTGGGTTTTGTGAGCAGAGATGGGCGGGGATTCGACATGACCCGTTGGTTTCATTCTGATTGCGCTTCTTTCGGTTCCGACCCTGTTTCTTCCGCCGAGCAGATTAATGGGTTCGCGCTCTTGAAGGGGGATGACCAGGAAGCTCTGAAGAAATTAGTTAGCAGAAGCCATGAATCTAAGGTCCGCAAAAGGGATGAGGATGAAGAAGATGGCATTGAAGAAAGAGATCAAAAGAAAGTCGAGTTGTCTGCCTCTAGTTTGCTGCCAAAGTTAGACCTTGTCCTTTCAGCTTCCAACATAAAGACCAAGTATAAGGATGCTACACTTTTACCTAAATGGAAGGCATTCCAGACACTCATCTTTCTTGAGCAGGATGATGGGTTACATCATTCAAGTAAAATAGCTGCATTTGATTTTGATGGCTGTCTAGCAAACACATCTGTCAAAAGAGTAGGTGCCGAGGCATGGTCTCTGATGTACCCTTCGATTCCACAAAAACTCCAGAGCTTGTATAATGAAGGCTACAAGCTGGTAATATTTACGAACGAATCCAACATTGAGAGATGGAAGAACAAGAGACAGGTCGCTGTGGACTCCAAACTTGGGCGTCTTGATAGTTTTATTAGTCGAGTCAATGTCCCAGTTCAGGTGTTTGTTGCCTGTGGAATTGGAAGCGGATCGGGTAAATCCGAAGAGGATCCCTTCAGAAAACCGAAACCTGGGATGTGGCAGATCATGGAGAACCACTTCAATGGCGGCATCCCCATTAATCTAGACCAATGTTTTTATGTGGGGGATGCAGCTGGGAGAGGTAAGGATCACAGTGATGCTGATCTCAGATTCGCCCAGGCCATTGGGTTGAAGTTTTATGTTCCTGAAGAAATTTTTGTTGAGGAATAA 1116 45.07 MTYCNNHILSSLLQIPNSPLSHFSRFSSHSRRIFFQGPTMSTSAVKIVAEYAKSNRSTCKNCSKTIPAKALRLGFVSRDGRGFDMTRWFHSDCASFGSDPVSSAEQINGFALLKGDDQEALKKLVSRSHESKVRKRDEDEEDGIEERDQKKVELSASSLLPKLDLVLSASNIKTKYKDATLLPKWKAFQTLIFLEQDDGLHHSSKIAAFDFDGCLANTSVKRVGAEAWSLMYPSIPQKLQSLYNEGYKLVIFTNESNIERWKNKRQVAVDSKLGRLDSFISRVNVPVQVFVACGIGSGSGKSEEDPFRKPKPGMWQIMENHFNGGIPINLDQCFYVGDAAGRGKDHSDADLRFAQAIGLKFYVPEEIFVEE 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4038802 4042305 - CmaCh09G008220.1 Cma09g00822 300827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00822 371 Pfam Polynucleotide kinase 3 phosphatase 205 368 IPR013954 -
Cma09g00822 371 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 46 137 - -
Cma09g00822 371 SMART zf_PARP_3 50 126 IPR001510 GO:0003677|GO:0008270
Cma09g00822 371 SUPERFAMILY HAD-like 187 368 IPR036412 -
Cma09g00822 371 CDD HAD_PNP 205 368 - -
Cma09g00822 371 MobiDBLite consensus disorder prediction 127 148 - -
Cma09g00822 371 Gene3D - 183 371 IPR023214 -
Cma09g00822 371 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 47 125 IPR001510 GO:0003677|GO:0008270
Cma09g00822 371 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 50 125 IPR001510 GO:0003677|GO:0008270
Cma09g00822 371 TIGRFAM DNA-3'-Pase: DNA 3'-phosphatase 193 368 IPR006551 -
Cma09g00822 371 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 40 370 - -
Cma09g00822 371 Gene3D - 39 153 IPR036957 GO:0003677|GO:0008270
Cma09g00822 371 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 205 361 IPR006549 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00822 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] - csv:101207352 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00822 Cma-Chr9:4038802 Cma19g00077 Cma-Chr19:443823 4.90E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00822 Cma_Chr09 FPKM 6.208631 7.985192 4.874879 5.008699 18.583969 16.205526 19.270918 10.572909 10.474665 11.406446