Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00831 ATGGGAAAGCTTCACTTTCTGTTTTCTTTCTTGTTGTTTGCTGCCATGGTTTCTGGAAGGCATGAAACTGAAAGAACTGCGGGCTCAACAATGGTTGATGGTAAACAGGGCAGGATAGGAGCCATTGTAGATATGAGTTCTAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTATAGAGGATTTTAACTCCTTGAGCAATCGAAATTTCAGTCTCGTCATTAGAGATTCCAGAAGTGATCCCAATCTAGCAGCTCTAGCTGCTAAAGATCTCATCAGTATGCAACGAGTTCAGGTTCTTATAGGGCCCCAAACCTGGGAAGTGGCATCCGTAGTTTCTGAGGTTGGAAATGAGGAGAAGATTCCGGTATTGGCGTTAGCTAACGAAATACCGAAGTGGGCAAACGAGAGGTTCAAATTCTTGGTCCAAGCTTCTCCCTCTCAGTTAAATCAAATGAGGGCTATAGCTGGTATTATCGGTTCGTGGGATTGGCACCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACTGAAATATTTCCTCATCTTGTACATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAATTTGATTCTGATATATTCACCAAAGAATTGGAGAGGCTAAGAAGAGGGTCTAGCAGAATTTTTGTAGTTCATTTGCCATTCAAGTTGGCAATGCGTTTATTCGAGACAGCAAAAGAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACCGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTGTACTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCGATATCGTGACTTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTTTGATGAGGACAACAACGAGCCCGGTATCTTTGCAGTACAGGCTTATGATGCTGCAACGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGTAATGATCACTTGTTAGAAAAAATAGAGCTCACTGACTTTCAAGGACTCGGTGGAAAGATTCAGTTCAAGGACAGAAAATTGGCCCCAGCTGATACTTTTCAGATTATCAATACCTTGGGAAGGAGTTATATGGAACTAGGCTTCTGGTCTGATACACTAGGATTCTCGCAAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTAGCCAAGTGTTTTGGCCAGGTGGATCGTCTGAAACTCCAAAGGGATGGGTCGTACCAACAGATGCCAATCCATTGAGAATTGGGGTGCCAACTGGTTCCATGTTCAAACAGTATGTACAAGTGGAAGAAGATCCTAAGGCCTTCAATGGACTTGCAATTGATCTGTTTAAAGAAACATTAGGCATCCTGCACGCCCCGCTGTCGTACCAGTTCCATTGTTTCGATGGCTCATATGATGATTTGGTGAATGAAATCTACTTGAAGAAATTTGATGCAGCTATAGGAGACATAGCCATAATATCACGACGCTATGAACATACCGAGTTTACACATCCTTACTCCGAAGCAGGACTGGTGATGATAGTTCCTACCACAAATGACACAAGCAACAAATCATTGTTGTTCACAAAGCCCTTTACTATGACCATGTGGATTCTAATTGCTGTGGTAACCGTCTACAATGGCTTTGTCGTGTGGCTCATAGAACGAGGTCACTATCCTGAACATGATGGTTCAATGCTTGATGAAGCTGGAGCCATGTTTTTCTCATCCTTCACCACTCTCTTCTCCTTGCACGGCAATAGGCTGCACAGTAACTTATCGCGGATGGCTATGGTGGCGTGGCTATTCATGGCACTTGTGGTAACTCAGACATACACAGCTAATCTTGCCAGCATGCTCACTGTTCAAAAGTTCAAGGCGACTATATCGGATATTGAGACTCTCCAGAAAACGAATGCATATGTGGGAAACGGCAGAGGAACCTTTGTCAAAAGCTATTTGGAAGAAGTTTTGGACTTCCCTGCCAAAAATATAAAAAACTACACTACCCAAAACGATTTAGCTGAGGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTATGCAAAACTATTCCTCGCAAGATTTTGCAATGAATTCATGATTTCTGGACCAACCTACCATGTTGGAGGATTTGGATTTGCGTTTCCGAGAGGCTTTCCGCTGTTACACGAAGTTAACAAAGCACTGCTTAAGGTATTTGAAAATGGCAAGTATAGAGAGTTGGAAGAAAGCATGATTGCTAGGGAGAAATGTGAGGATAGGGAAGCAAAAGTGAAAAGTTCAAGCCTCAGCCCCAACAGCTTCTTTTTACTATTTGTATTGAGTGGAGGAGTATCAACATTAGCATTGACATTGTACACTATCAGTGCTCATAAATCATTTCTTCAACAGACCGTTCTTTGGAGATTAATGTTAGCTGTAATCAAGAACTGGGGAAATCACAGGAGGGAATTTTCTCGACAACCAAACGACGTGCTGCTAATCGTCCCAAAGATCTTCCCAAACGCTACAAACCTGCAAATTCAGTTCCCTGCTCTGTTTTCTTTCTTCTTGGTTACTTTGGTAGTTTCTTGGAGGCATGAAACTGAAGGAAACATGAACTTGACGATGGATGATAGTGGAAAGGGCAGAATTGGGGTCATTGTAGACAAGAGTTCCAGGATTGGCAAGGAAGAGATTTTGGCTATGCAGATGGCTGTTGAAGATTTTAACTCCTCCAGGAATCAGAGCTTTAGTCTTGTTATCAGAGACTACAAAACTAAAGAACTCATCAGTATGCAACGAGTTCAGGTTCTTATAGGACCCCAAACCTGGGAAGCGACATCCATAGTTTCCGAGGTCGGAAATGAGAAGCAGACTCCAGTTCTAGCATTAGCTAATGAAATACCGAAGTGGGCAAATGAGAGGTTCAAATTCTTGGTCCAAGCTTCTCCCTCCCAGTTAAATCAAATGAGAGCTATAGCTAGTATCATCGGTTCATGGGATTGGCACCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACTGAAATATTTCCTCATCTTGTACATGCCCTCAAAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCACAATTTGATTCTGATATATTCACCAAAGAATTGGAGAGGCTAAGAAGAGGGTCTAGCAGAATTTTTGTAGTTCATTTGCCATTCAAGTTGGCAATGCGTTTATTCGAGACAGCAAAAGAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACCGATACTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTGTACTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGAAATCCTCGATATCGTGACTTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTTTGATGAGGACAACAACGAGCCCGGTATCTTTGCAGTACAGGCTTATGATTCTGCAACGACAGCAGCTATGGCAATGAGTGAAATCCAAGAAAAGGGTAATGATCACTTGTTAGAAAAAATAGAGCTCACTGACTTTCAAGGACTCGGTGGAAAGATTCAGTTCAAGGACAGAAAGTTAGCCCCAGCTGATACATTTCAGATTATCAATATCATGGGAAGGGGTTGTAGGGAACTCGGCTTCTGGTCTGATAAATCAGGGTTCTCACCAGAGTCGAGGGAAAATTTGTCGTCTAACTCATCGATGAAGGATCTTAGCCAAGTGTTTTGGCCGGGTGGTTCTTCGGAAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATCCATTGAGAATTGGGGTGCCAAATGGTTCCATGTTCAAACAGTATGTACAAGTGGAAGAAGATCCTAAGGGAAACAATTTAACCTTCAAAGGACTTGCAATTGATCTGTTTAAAGAAACCATACACAGCCTGCACGTCCCTCCGTCGTACGAGTTCTATCGTTTCAATGGCTCATATGATGATTTGGTGAAGCAAATCTACTTAAAGAACTTCGATGCAGCTGTAGGTGATATCGCCATAATATCACGACGCTACGAACACGCCGAGTTTACACATCCTTACTCCGAAGCAGGACTGGTGATGATAGTTCCTACCAGAAAAGACAAAAGCAACAAATCATTGTTGTTCACAAAGCCCTTTACATTAACCATGTGGATTGCAATTGCTATGATAAATGCCTACAATGGCTTTGTAGTCTGGTTCATAGAACGAAGTCGCTATCCAAGTCACGACGGTTCGATGTTTAATCACGCTGGCACCATGCTTTGCTCATCCTTCACGACTCTCTTCTCACTACATGGTAACATGCTGCATAGTAACCTGTCACGGATGACCATGGTGGTTTGGTTGTTTATGGCACTCGTGATAACTCAAATATATACCGCGAATCTTACAAGCATGCTCACTATTCAAAGACTCGAACCGACTATATCGAATATTGAAACGCTCCAAAGGGGAAACGCTTTAGTCGGATATGGTAAGGGATCCTTTGTCAAAAGATATTTGGAAGAAGTTTTACACTTCCGACCCGAAAATATAAAGAACTACTCCACACCTGATGATTTTGCTGAAGCTCTCAGAAACCAGGAGATATCAGCTGCTTTTCTTGAAGTTCCTTTTGTGAAAATATTCCTTGCTAGATTTTGCAGGGAGTTCATGATTTCTGGGCCAACCTACAAAGTTGGTGGATTTGGATTTGCGTTTCCACGAGGCTCGCCGTTGTTAATGGATATCAACGTAGCGTTGCTTAAGGTATCTGAAACTGGGAAGTTCAAAGCTTTGGAGGATAGCATGATTGCTAATGAGACATGTGAGGATGATGATGCAAAGGAGGAAGGTTCACGCCTCAGCCCCAACAGCTTCTTTATACTGTTTGTATTTAGTGGAGGAGTATCAACAATAGCTCTCACATTGTTCATCTTTAGTGCTCATAGCTCTAGTTTTCATCAGAACGCTATCTGGAGATTAATGATAGCTGTAATGAGACACTGGGGAAAGCATAGGAGGTCGCCTTCTCGACGAGTATGCGACAACCTGCAATCGACGACCGTCTCAAATAACTTCGTGCACAACACGAACTTACGAATTCAGGTCTAG 5190 42.31 MGKLHFLFSFLLFAAMVSGRHETERTAGSTMVDGKQGRIGAIVDMSSRIGKEEILAMQMAIEDFNSLSNRNFSLVIRDSRSDPNLAALAAKDLISMQRVQVLIGPQTWEVASVVSEVGNEEKIPVLALANEIPKWANERFKFLVQASPSQLNQMRAIAGIIGSWDWHLVNVIYEDRDFSTTEIFPHLVHALKDVGAEVSEFVGLSQFDSDIFTKELERLRRGSSRIFVVHLPFKLAMRLFETAKEMGMMGKDYVWITTDTFTSLAHSFNVSINSVLQGVVGVKSYFPERNPRYRDFYLRFCQRFRLEHFDEDNNEPGIFAVQAYDAATTAAMAMSEIQEKGNDHLLEKIELTDFQGLGGKIQFKDRKLAPADTFQIINTLGRSYMELGFWSDTLGFSQELRENSSSSSSMKDLSQVFWPGGSSETPKGWVVPTDANPLRIGVPTGSMFKQYVQVEEDPKAFNGLAIDLFKETLGILHAPLSYQFHCFDGSYDDLVNEIYLKKFDAAIGDIAIISRRYEHTEFTHPYSEAGLVMIVPTTNDTSNKSLLFTKPFTMTMWILIAVVTVYNGFVVWLIERGHYPEHDGSMLDEAGAMFFSSFTTLFSLHGNRLHSNLSRMAMVAWLFMALVVTQTYTANLASMLTVQKFKATISDIETLQKTNAYVGNGRGTFVKSYLEEVLDFPAKNIKNYTTQNDLAEALRNQEIAAAFLEVPYAKLFLARFCNEFMISGPTYHVGGFGFAFPRGFPLLHEVNKALLKVFENGKYRELEESMIAREKCEDREAKVKSSSLSPNSFFLLFVLSGGVSTLALTLYTISAHKSFLQQTVLWRLMLAVIKNWGNHRREFSRQPNDVLLIVPKIFPNATNLQIQFPALFSFFLVTLVVSWRHETEGNMNLTMDDSGKGRIGVIVDKSSRIGKEEILAMQMAVEDFNSSRNQSFSLVIRDYKTKELISMQRVQVLIGPQTWEATSIVSEVGNEKQTPVLALANEIPKWANERFKFLVQASPSQLNQMRAIASIIGSWDWHLVNVIYEDRDFSTTEIFPHLVHALKDVGAEVSEFVGLSQFDSDIFTKELERLRRGSSRIFVVHLPFKLAMRLFETAKEMGMMGKDYVWITTDTFTSLAHSFNVSINSVLQGVVGVKSYFPERNPRYRDFYLRFCQRFRLEHFDEDNNEPGIFAVQAYDSATTAAMAMSEIQEKGNDHLLEKIELTDFQGLGGKIQFKDRKLAPADTFQIINIMGRGCRELGFWSDKSGFSPESRENLSSNSSMKDLSQVFWPGGSSETPRGWVVPTDANPLRIGVPNGSMFKQYVQVEEDPKGNNLTFKGLAIDLFKETIHSLHVPPSYEFYRFNGSYDDLVKQIYLKNFDAAVGDIAIISRRYEHAEFTHPYSEAGLVMIVPTRKDKSNKSLLFTKPFTLTMWIAIAMINAYNGFVVWFIERSRYPSHDGSMFNHAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQRLEPTISNIETLQRGNALVGYGKGSFVKRYLEEVLHFRPENIKNYSTPDDFAEALRNQEISAAFLEVPFVKIFLARFCREFMISGPTYKVGGFGFAFPRGSPLLMDINVALLKVSETGKFKALEDSMIANETCEDDDAKEEGSRLSPNSFFILFVFSGGVSTIALTLFIFSAHSSSFHQNAIWRLMIAVMRHWGKHRRSPSRRVCDNLQSTTVSNNFVHNTNLRIQV 1729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4081071 4090563 + CmaCh09G008310.1 Cma09g00831 300836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00831 1729 PANTHER GLUTAMATE RECEPTOR 29 851 - -
Cma09g00831 1729 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 893 1716 - -
Cma09g00831 1729 SMART GluR_14 1294 1632 IPR001320 GO:0015276|GO:0016020
Cma09g00831 1729 SMART GluR_14 439 773 IPR001320 GO:0015276|GO:0016020
Cma09g00831 1729 CDD PBP1_GABAb_receptor_plant 38 400 IPR044440 -
Cma09g00831 1729 SUPERFAMILY Periplasmic binding protein-like II 415 768 - -
Cma09g00831 1729 Pfam Bacterial extracellular solute-binding proteins, family 3 457 768 IPR001638 -
Cma09g00831 1729 Pfam Ligand-gated ion channel 769 801 IPR001320 GO:0015276|GO:0016020
Cma09g00831 1729 Pfam Bacterial extracellular solute-binding proteins, family 3 1316 1627 IPR001638 -
Cma09g00831 1729 SUPERFAMILY Periplasmic binding protein-like I 38 430 IPR028082 -
Cma09g00831 1729 Pfam Ligand-gated ion channel 1628 1659 IPR001320 GO:0015276|GO:0016020
Cma09g00831 1729 PANTHER GLUTAMATE RECEPTOR 893 1716 - -
Cma09g00831 1729 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 851 - -
Cma09g00831 1729 Gene3D - 547 690 - -
Cma09g00831 1729 Gene3D - 1405 1545 - -
Cma09g00831 1729 CDD GluR_Plant 436 771 - -
Cma09g00831 1729 SUPERFAMILY Periplasmic binding protein-like I 902 1285 IPR028082 -
Cma09g00831 1729 Gene3D - 1011 1168 - -
Cma09g00831 1729 Gene3D - 156 313 - -
Cma09g00831 1729 CDD PBP1_GABAb_receptor_plant 902 1252 IPR044440 -
Cma09g00831 1729 CDD GluR_Plant 1291 1630 - -
Cma09g00831 1729 Pfam Receptor family ligand binding region 919 1234 IPR001828 -
Cma09g00831 1729 Pfam Receptor family ligand binding region 55 379 IPR001828 -
Cma09g00831 1729 Gene3D - 1183 1294 - -
Cma09g00831 1729 Gene3D - 326 440 - -
Cma09g00831 1729 Gene3D - 443 546 - -
Cma09g00831 1729 Gene3D - 1295 1404 - -
Cma09g00831 1729 Gene3D - 35 155 - -
Cma09g00831 1729 Gene3D - 900 1010 - -
Cma09g00831 1729 SUPERFAMILY Periplasmic binding protein-like II 1270 1627 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00831 - - - cmax:111476825 1721.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01234 Cma09g00831 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00183 Cma-Chr5:786574 Cma09g00831 Cma-Chr9:4081071 6.60E-91 dispersed
Cma05g00184 Cma-Chr5:790643 Cma09g00831 Cma-Chr9:4081071 1.19E-120 dispersed
Cma09g00831 Cma-Chr9:4081071 Cma12g00380 Cma-Chr12:1953960 2.88E-122 dispersed
Cma01g01234 Cma-Chr1:8887488 Cma09g00831 Cma-Chr9:4081071 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00831 Cma_Chr09 FPKM 2.941157 3.432037 2.627522 2.613034 9.419925 10.496214 10.188583 5.995767 5.903298 5.688548