Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00835 ATGGAGTCTCAGCTCAAGAAGAGCGCTAAATCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAGTCATTCTTCTTCCCTCCATCCCTCGTTTTTCCGTCTCTCTTTCCATCACTGATTTTTATCTTCTGATCCTGCAGAAACTGAACCCTCATGGTTCAAAGCGATCCTCCACTGTACCGAAATCCGAAGCCTCATCAAAGACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCGGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACAATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGATCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTAAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATGA 867 44.87 MESQLKKSAKSKLLNPNWALLQQVILLPSIPRFSVSLSITDFYLLILQKLNPHGSKRSSTVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYNEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRSLRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4115291 4119363 - CmaCh09G008350.1 Cma09g00835 300840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00835 288 Pfam Exonuclease 104 251 IPR013520 -
Cma09g00835 288 SMART exoiiiendus 102 260 IPR013520 -
Cma09g00835 288 MobiDBLite consensus disorder prediction 53 67 - -
Cma09g00835 288 Gene3D - 99 278 IPR036397 GO:0003676
Cma09g00835 288 PANTHER RNA EXONUCLEASE 4 70 279 - -
Cma09g00835 288 MobiDBLite consensus disorder prediction 53 86 - -
Cma09g00835 288 CDD REX4_like 104 252 IPR037431 GO:0006364|GO:0008408
Cma09g00835 288 MobiDBLite consensus disorder prediction 69 86 - -
Cma09g00835 288 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 70 279 - -
Cma09g00835 288 SUPERFAMILY Ribonuclease H-like 103 257 IPR012337 -
Cma09g00835 288 MobiDBLite consensus disorder prediction 269 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00835 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - csv:101211187 428.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02712 Cma-Chr4:18316699 Cma09g00835 Cma-Chr9:4115291 1.42E-11 dispersed
Cma09g00835 Cma-Chr9:4115291 Cma09g01070 Cma-Chr9:5623123 1.77E-18 dispersed
Cma09g00835 Cma-Chr9:4115291 Cma15g00333 Cma-Chr15:1535048 2.87E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00835 Cma_Chr09 FPKM 16.047251 17.790487 16.843513 18.411806 21.840755 22.160753 23.316633 28.258976 29.774309 29.157251