Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00836 ATGTTTGTGAGAGCGCCGCTGCTTAAGGTTTCATCATTCTACTCAATCCCATGTCATTCTCTGGTTCCGTTGTCTCTCTCTTCCGCAATTTGTTCTTCTCCACGGACACCTTTAGCTATCCGATGTCATTCATCTCTCCCCACAGCCCACGAACCATCTTCTTCGGCTCCCTCTGAATCCCTCGATGTGGTGCATAATCGTTGGAGACCCATGTGTTTGTATTACACACAGAGCAAGTGTACAATGATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTGGATGTTGCTAGCTCAAAACATATGCGAACTCAGGATATTGAGTTTTTTCTAGTGCTTGATTTGGAGGGTAAAGTTGAAATAATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACACTGGATGTGACGGGTTTTTTCCACAGGTTTGTTAGGCCTTCAAGAATGAGTGAACGAAGGATAAATGAGTACATTGAAGGAAAATATGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATACAACAGTTCGAAGATTGGCTGGTTGAGCATCAGATATGGAGGAAGGATCTGGGTGGTGTTCTTGATCGAGCAGCATTCGTGACATGTGGAAACTGGGATATAAAAACTCAGGTCCCACATCAATGCAGCGTGTCAAACATGAAACTTCCTGACTATTTTATGGAGTGGATCAATATCAAAGATGTCTATCTCAACTTTTACCAAAAGAAGGCAACAGGAATGGCGATGATGATGAGACAACTCGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGACACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTTGCTGATGGTGCACATTTGCAAATCACTGCTCGTAGGAATCCCAATTCTCCTCAACATGTTAAGTTTCATTTTGAGAACCGTATTTAA 978 42.84 MFVRAPLLKVSSFYSIPCHSLVPLSLSSAICSSPRTPLAIRCHSSLPTAHEPSSSAPSESLDVVHNRWRPMCLYYTQSKCTMMDDPLHIKKFNHDISRELQVDVASSKHMRTQDIEFFLVLDLEGKVEIIEFPVILVNAKTLDVTGFFHRFVRPSRMSERRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVEHQIWRKDLGGVLDRAAFVTCGNWDIKTQVPHQCSVSNMKLPDYFMEWINIKDVYLNFYQKKATGMAMMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITARRNPNSPQHVKFHFENRI 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4119935 4123637 - CmaCh09G008360.1 Cma09g00836 300841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00836 325 CDD ERI-1_3'hExo_like 118 296 - -
Cma09g00836 325 Gene3D - 105 324 IPR036397 GO:0003676
Cma09g00836 325 PANTHER 3'-5' EXONUCLEASE ERI1-RELATED 37 325 - -
Cma09g00836 325 SUPERFAMILY Ribonuclease H-like 115 305 IPR012337 -
Cma09g00836 325 PANTHER OS06G0353400 PROTEIN 37 325 - -
Cma09g00836 325 Pfam Exonuclease 114 293 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00836 - - - csv:101211439 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00474 Cma-Chr5:2226765 Cma09g00836 Cma-Chr9:4119935 1.81E-17 dispersed
Cma09g00836 Cma-Chr9:4119935 Cma12g00134 Cma-Chr12:577690 2.88E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g171 . . . . . . . . . . . Cma09g00836 . Car09g00751 Sed05g2541 Cpe06g00667 . Bhi09g03472 Tan01g4356 Cmetu07g0939 . Hepe01g1415 Mch11g1036 . Cla11g01731 Cam11g1800 Cec11g1821 Cco11g1827 Clacu11g1959 Cmu11g1769 Cre11g2177 . . Cone14ag1048 . Lsi04g02040 Csa04g02310 Chy07g00046 Cme07g00564 . . . . . . . . . . Cmo09g00831 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011810 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00836 Cma_Chr09 FPKM 2.181203 2.037604 2.711589 1.835111 21.39369 21.774792 22.251963 1.922865 2.095696 2.711344