Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00848 ATGGGACGGATTTTTGTTGTGGAAAGGGAAGGGAGTTCCTACAGATGCAAGTTCTGCAATACGCAGTTAGCTCTAGCCGACGATCTTGCATCTCGGGCCTTTCATTGCCGCCGCGGTAAAGCATATCTTTTCAATAATGCGATAAACTTCTTTTTGGGAGCCTTGGAAGATAGGATAATGCTCTCTGGATCCCATACTGTTGCAGACATATTTTGTTGCACATGTGGACAAATTGTCGGATGGAAATACGAAGCAGCGCATGAGAAGAGCCAGAAGTACAAGGAGGGGAAGTATGTTCTTGAAAGGGGGAGGATAGTCGACGACATTGAATTCTCGACTGGCTTCTACGTAGACTCTCGGTCTAGTTCAATCCGGATGGGGAAAGCCTCTTCTTCTCGCAAGAAGGAGCGTTCCAAGACTTCTTCATCCCAGAGAAGTAGGAGAAAGAGTAAGAGTAGTAGGAAATTGAAGTCCAAGAAGCTGCGGTATCGCCACGATTCTCCCTCTTGCTCCGACACTGATTTTGAAAGTTCAACTTCAGTGTCTTCTTCTAGCTCGGAGGATGACAAAAAAGTGAGAAGATCTCGATCCAAGACGCGAAAGAATTCGAAGCCTAGTAAAAAGAGATCCAAGAAGCAATCTCATGACCATCAAAGTAGGGAATGCTCTCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAAACGACAGATATGAGGCTAAGAAGACCAACAAAAAGAAGCGTAGAAGAGATGTGAGTGTTGGTGCCACAAATAGTGACTCTCTGAGCCGCTCTACTTGTGGAGATGGAAGTTCAACCAGCAGTGATAGTGAAATTGATAGGCGTAGGGGAAGGTCTGGAAAGAGGAAAAGAAATATGGTGAAGACTGAAGAAAGAAGATACAGGTCAAAGAGCCGTTCACCATGCTCTTTATGTAGTGATGGTAGCGATTTTCAGAATGAGGTTGAGGATGACAGTTATGTCAAAAACTGCTGTAGACGACTAAAATCCATAATTGTTGTAGTAGGGGAGGAAGATGAATTAAAGACTTTTGTTGGGAATGAACAACAAGAAGCGGTCACGCATCAGCTTGATGATAACCACCCTTTGTTCGAGGATATGAATAGTAAGGATGGGACGTGTAAAAGAGAATTAGACTATGTTATATCTAAAGAGGCACCAGAGGTAGAAAGCAAAAACAAAATGGCTACACCTGACAATAGGAACTCCCTGATTCTAAACAATGATGGAGTTCGAAATGAGGGAAGCAACAAAAACCATGGAGGAGTAACTAATGATCATTCTTTAGATGAAAGAAAGAACGGCTGTTCTGGAAATACCGACAACATAAATTGTATCGATTTAGAGTCAATTTTAAGACAGAAGGCCCTGGAAAACCTTAGAAAGTTCAAAGGGGCTTCGCCAAGAAATGTGGAAATAATTGCTAATTGCAAAGTTGAGAATAATAATGATGCAAAGCAATTGTTTTCCCCTGTCTCTAAGTCAGTTCATGTGGCATCTCCTAGGGATGATGCCGAAACAAATGGTAAAGGGTTCTCTAGACAAGATGGAGGGGATGCGGTAAATTCAATGATAATTAAGGGGAATGGTTTTAAGTCTACAGATGCAATAGATACAGCAGTTGCATCTATGCATGATCCTGTCTGTTCTTCACAGAATCTCGGTAAAATTTCCAATGGAAGTAATGGTATGAATGAACTGAAGCAGGATATTTCCTCATTAGACCAAGAGGTTATAAATGATAATATTTGCCTGAAGGCAGATGCAAATATTTATTCTACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTTAGGCCAGAGTCAAAAGTTGATTCTCTTATAGAGAAGGCATCTGCTGCTCAGGAATGTATCCAAACAAAGCCATCTATATCTGACATTGTCGTAGACGAGATTTCTCAAACCCAGACCCAGAAGACGAATAACGACGATCAAAATATTCGTAATGGTTTTGGTTCTTCAGCTTATAAGCCTTCTTCTTCCCTTAACTCTATTTCAGGAGAAAATAGCTTGGACAAGTCCAGACAGGAGAGTGGGGAAGGCTCACAATTTGAACAGAAAACCATGTCTGTGATGCGTGGTGGAGAAATGGTGCAGGTGAACTACAAGGTCTACATCCCGAAGAGAGCGCCCGCTTTGACTAGGAGACAACTCAAGCGCACCCAAAACACTAAGGCCACAATGAAACAAACAAAATCGAAGCCGGAATTGAATCTCACCACGATATCTTTCCGGCACCGGATGCGAACAGATAGATACTTCTCAGATGTGTAA 2316 42.1 MGRIFVVEREGSSYRCKFCNTQLALADDLASRAFHCRRGKAYLFNNAINFFLGALEDRIMLSGSHTVADIFCCTCGQIVGWKYEAAHEKSQKYKEGKYVLERGRIVDDIEFSTGFYVDSRSSSIRMGKASSSRKKERSKTSSSQRSRRKSKSSRKLKSKKLRYRHDSPSCSDTDFESSTSVSSSSSEDDKKVRRSRSKTRKNSKPSKKRSKKQSHDHQSRECSPHPRKRKHSKRNDRYEAKKTNKKKRRRDVSVGATNSDSLSRSTCGDGSSTSSDSEIDRRRGRSGKRKRNMVKTEERRYRSKSRSPCSLCSDGSDFQNEVEDDSYVKNCCRRLKSIIVVVGEEDELKTFVGNEQQEAVTHQLDDNHPLFEDMNSKDGTCKRELDYVISKEAPEVESKNKMATPDNRNSLILNNDGVRNEGSNKNHGGVTNDHSLDERKNGCSGNTDNINCIDLESILRQKALENLRKFKGASPRNVEIIANCKVENNNDAKQLFSPVSKSVHVASPRDDAETNGKGFSRQDGGDAVNSMIIKGNGFKSTDAIDTAVASMHDPVCSSQNLGKISNGSNGMNELKQDISSLDQEVINDNICLKADANIYSTTNRSNLVIAAFRPESKVDSLIEKASAAQECIQTKPSISDIVVDEISQTQTQKTNNDDQNIRNGFGSSAYKPSSSLNSISGENSLDKSRQESGEGSQFEQKTMSVMRGGEMVQVNYKVYIPKRAPALTRRQLKRTQNTKATMKQTKSKPELNLTTISFRHRMRTDRYFSDV 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4151087 4162057 + CmaCh09G008480.1 Cma09g00848 300853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00848 771 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Cma09g00848 771 MobiDBLite consensus disorder prediction 396 440 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 649 686 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 224 249 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 291 305 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 195 214 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 403 430 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 500 523 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 255 274 - -
Cma09g00848 771 Coils Coil 228 248 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 140 162 - -
Cma09g00848 771 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 14 105 IPR004910 -
Cma09g00848 771 PANTHER TRANSCRIPTIONAL REGULATOR ATRX-LIKE PROTEIN 126 734 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 649 704 - -
Cma09g00848 771 MobiDBLite consensus disorder prediction 124 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00848 - - - cmo:103501777 774.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01218 Cma09g00848 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01220 Cma-Chr1:8831517 Cma09g00848 Cma-Chr9:4151087 5.16E-65 dispersed
Cma03g00359 Cma-Chr3:4240931 Cma09g00848 Cma-Chr9:4151087 9.88E-43 dispersed
Cma04g01123 Cma-Chr4:5810415 Cma09g00848 Cma-Chr9:4151087 1.95E-48 dispersed
Cma09g00848 Cma-Chr9:4151087 Cma15g00129 Cma-Chr15:601205 4.08E-38 dispersed
Cma01g01219 Cma-Chr1:8829829 Cma09g00848 Cma-Chr9:4151087 9.94E-07 transposed
Cma01g01218 Cma-Chr1:8827990 Cma09g00848 Cma-Chr9:4151087 0 wgd
Cma13g00628 Cma-Chr13:6023083 Cma09g00848 Cma-Chr9:4151087 3.85E-48 wgd
Cma18g00387 Cma-Chr18:2112852 Cma09g00848 Cma-Chr9:4151087 1.22E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g186 . . . . . . . . . . Cma01g01218 Cma09g00848 Car01g01042 Car09g00761 . Cpe06g00676 Cpe02g00693 Bhi09g03455 . . . Hepe01g1403 . . Cla11g01743 Cam11g1811 Cec11g1831 Cco11g1837 Clacu11g1971 Cmu11g1781 Cre11g2188 Cone6ag0164 . . . Lsi04g02052 Csa04g02324 Chy07g00056 Cme07g00577 . . . . . . . . . Cmo01g01273 Cmo09g00841 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005837 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00848 Cma_Chr09 FPKM 17.518751 17.150301 25.919001 24.880632 21.448484 18.266451 20.641277 34.828968 33.146915 31.273335