Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00853 | ATGACTGGGAAAGAGATTCTCCACAAGATGAAGGAAAAAGTTGGGCTCGGGTCGTCCGATCCGGACTCAGGAAAAGGAAAGAGCAAGATGTCGAAGCATGTCACGCATGGTTATCATTTGGTGAAAGGGCAATCGAACCATGCCATGGAAGATTATGTGGTTGCAGAGTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAACTCTATCCCTGATTATTTACAGTCCCATCTATTTGCTAATATCATAAACGAGCCTGATTTCTGGACGAACCCAACGAACGCAGTCAGGAAAGCATACGAGCAAACCGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACAGCCATATTGATAGACTGTAAGAAACTGGTAGTCGGCAATGTGGGGGACTCCCGTGCAGTTATCTGTCGTAACGGTAAAGCCAGTCAATTATCAATCGATCACGAACCGAGCGTTGAAAGAAAAAGCATCGAGGACAGAGGTGGTTTCGTTTCAAACTTTCCTGGAGATGTTCCACGTGTCGACGGGCAGTTGGCGGTCGCAAGGGCGTTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCAGAGCCTTACGTGGTTGTGGAGATGATCGATGACGAGACCGAATTGGTTATCTTAGCAAGCGACGGATTGTGGAAGGTTATGTCGAACGAGGAAGCCGTAGAGTCGATCAGGCATCTGAAAGACGCTCAAGCAGCTGCCAAACACCTGACAGAAGAGGCCCTCAAGAGGAAGAGCAGAGATGATATTTCTTGTATAGTTGTGAGATTTCTGTGA | 852 | 45.77 | MTGKEILHKMKEKVGLGSSDPDSGKGKSKMSKHVTHGYHLVKGQSNHAMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFANIINEPDFWTNPTNAVRKAYEQTDAYILEKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICRNGKASQLSIDHEPSVERKSIEDRGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVVEMIDDETELVILASDGLWKVMSNEEAVESIRHLKDAQAAAKHLTEEALKRKSRDDISCIVVRFL | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4185781 | 4189023 | + | CmaCh09G008530.1 | Cma09g00853 | 300858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00853 | 283 | ProSitePatterns | Glycosyl hydrolases family 5 signature. | 87 | 96 | IPR018087 | GO:0004553|GO:0005975 | |
| Cma09g00853 | 283 | SUPERFAMILY | PP2C-like | 31 | 282 | IPR036457 | - | |
| Cma09g00853 | 283 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
| Cma09g00853 | 283 | CDD | PP2Cc | 42 | 282 | IPR001932 | - | |
| Cma09g00853 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 35 | 282 | IPR001932 | - | |
| Cma09g00853 | 283 | Gene3D | - | 29 | 283 | IPR036457 | - | |
| Cma09g00853 | 283 | SMART | PP2C_4 | 27 | 280 | IPR001932 | - | |
| Cma09g00853 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 1 | 282 | - | - | |
| Cma09g00853 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Cma09g00853 | 283 | Pfam | Protein phosphatase 2C | 47 | 275 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00853 | Cma-Chr9:4185781 | Cma11g01913 | Cma-Chr11:12647339 | 7.16E-134 | dispersed | |
| Cma09g00853 | Cma-Chr9:4185781 | Cma16g00257 | Cma-Chr16:1214713 | 1.31E-115 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00853 | K17506 | - | csv:101215129 | 507.294 |