Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00854 ATGGAGGCAAAGAGCTACGAAGGCAAGCATAATCTTAAAGATAAGGCGTACAGGGAAGGTGTGGTCGACGATGATTTAGAATACGAGACGGAGGAGGAAGACGTCGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGGACAGCAGTTTCTGGCCGTGGACGATCTGGCGTCGGCGTCTCTTCCCCGAGTTGCCAAGCACACAACTGCACAACAGATTTGAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCCGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTCGACGAAGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAACTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGACCAGCCTCGCAGTCTAAGGAAGGCCAATGCAGGCAGCTAATGGAAGATCAAAGAACCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACACCTGCATATCAGATAA 609 51.56 MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLMEDQRTRIQMAPTGSSGYKHLHIR 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4188880 4189772 - CmaCh09G008540.1 Cma09g00854 300859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00854 202 MobiDBLite consensus disorder prediction 144 177 - -
Cma09g00854 202 ProSiteProfiles Zinc finger SBP-type profile. 75 152 IPR004333 GO:0003677
Cma09g00854 202 MobiDBLite consensus disorder prediction 23 43 - -
Cma09g00854 202 Pfam SBP domain 78 151 IPR004333 GO:0003677
Cma09g00854 202 Gene3D - 69 139 IPR036893 GO:0003677|GO:0005634
Cma09g00854 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 202 IPR044817 GO:0003677
Cma09g00854 202 MobiDBLite consensus disorder prediction 158 177 - -
Cma09g00854 202 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 9 202 - -
Cma09g00854 202 SUPERFAMILY SBT domain 76 155 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00854 - - - csv:101215375 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00854 Cma-Chr9:4188880 Cma18g00021 Cma-Chr18:93182 9.07E-35 dispersed
Cma11g01915 Cma-Chr11:12656696 Cma09g00854 Cma-Chr9:4188880 1.08E-55 transposed
Cma13g00633 Cma-Chr13:6048123 Cma09g00854 Cma-Chr9:4188880 1.07E-45 wgd
Cma18g00382 Cma-Chr18:2093132 Cma09g00854 Cma-Chr9:4188880 1.52E-44 wgd
Cma07g00232 Cma-Chr7:1069227 Cma09g00854 Cma-Chr9:4188880 5.66E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35638 PF03110 SBP 1.60E-31 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00854 Cma_Chr09 FPKM 0.0 0.0 0.0 0.62811 0.993473 1.777956 1.397036 0.0 0.0 0.0