Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00865 ATGTGGATAGCAATGGAGGCATCATTTGATCCGCTTAGGAACCGTGATGATATATCTGGGGTTTGTGAGGAAGATATATTAGCTGATCCTTATTTGCGTTCACTTAAAGGGAATGATATTAGCTTAAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATTGTGGAGATTGTTAATATTGCTCATGCTCAAGGCATTGTTGTTCATAATGTGCGTCCTTCATGCTTTGTGATGTCTTCTTTCAACCATGTAACGTTTATTGAGTCGGCATCATGTTCGGATTCTGGCTCGGATTCTCTTGAGGAGGATGGTTTAAGTAGTCAAATGGCTGAGGTTAAAACATCGTCTTCTCCGTTTCCAAGCAGCCTTGGAAGCGAGGGCTTTCGATCTGTTATGGCTGAGGTAAACGCTTTGTCGGAGACTAGTTGTATGCAGTCGGGTTCAGTATATGCAGCTCAAGTATCGTTAAATGAAGGGTCTGGAGAATGTAGAAGAAAAGATAGCAGGCATGTTGAAGAAACAGAAAATAAGATGCAATCATTTCCAATGAAACAGATATTGGCCATGGAGACTACTTGGTACACTAGCCCAGAAGAAGCTTCTGATGGCCCAAGTTCGAGTGCTTCAGATATCTACCGGTTAGGGGTTCTTCTTTTCGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGGGAAGAGTAGAATTATGTCCAGCTTGAGGCATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCCGACCCAAGTAATCGACCTAAGCTAAGTGAGTTATTGCAGAGTGAATTTCTCAATGAATCAAAAGATGAACTAGAAGAACGTGAAACAGCAATTGAGCTTAGAAAAAGAATTGAAGAGCAGGATTTACTGCTAGAATATCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCATTTCTGTGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTTGCACCCAGATCTTTCGAAGGACAATTGTTTGTCATTAAATCTCCCTTCAATGACTCCTGCTGGATTGGGATCAAGGAAACGATTTAGACCAGGAATTTTGGTCCATAATATAGAAGCATGCGGTGATAACGTTGATGACAGTGAGAAATCAAGTTCCGACAATGAAAACGAACAAGGTGTACTTTTTAAAAGTTCTCGACTAATGAAGAACTTCAAGAAATTGGAGTTAGCGTATTTGTTGATGAGAGGTAGAGTAAACAAGCCATCAGGTAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCCGTAGTTTTGACTGAAAGAAGTTCGGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGCGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGTAAGTATCTATCCTTTAGCAAGTTGAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTTGATCGAGATGGGGAATTTTTTGCCACAGCCGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGCGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGACGAAACTAAGCAGTGTTTGTTGGAATCGGTACATCAAAAGTCAAATTGCTTCGAGTAATTTTGAAGGTGTAGTGCAGGTATGGGATGTCACGAGAAGTCAAGTAGTCACTGAAATGGGAGAACACGAGAGGCGCGTATGGTCCATTGACTTTTCATCAGCGGATCCAACAATATTGGCCAGCGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTTCAAGTATCGGCACAATCAGAACGAAAGCCAACGTCTGCTGTGTACAATTTCCTGCGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTACGACATGCGGAATATAAGAGTGCCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACCGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTATTGATTCTCCAGTCCTGTCCTTCACTGGCCACATGAACATAAAGAACTTTGTGGGACTGTCAGTCTCTGATGGTTACATTGCTACTGGGTCAGAGACAAATGAGGTTTTTATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTATAAGTTTCAAATGGATCCTCTTTCCAGTCATGAAATGGACGACTCTGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCATCTTCATTAGTAGCTGCAAACTCAACTGGGCACATCAAAATTTTGGAAATGGTTTAG 2511 41.74 MWIAMEASFDPLRNRDDISGVCEEDILADPYLRSLKGNDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEEDGLSSQMAEVKTSSSPFPSSLGSEGFRSVMAEVNALSETSCMQSGSVYAAQVSLNEGSGECRRKDSRHVEETENKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREGKSRIMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSNRPKLSELLQSEFLNESKDELEERETAIELRKRIEEQDLLLEYLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGLHPDLSKDNCLSLNLPSMTPAGLGSRKRFRPGILVHNIEACGDNVDDSEKSSSDNENEQGVLFKSSRLMKNFKKLELAYLLMRGRVNKPSGRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRTKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGSSIGTIRTKANVCCVQFPADSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVIDSPVLSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSSHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4237452 4244060 - CmaCh09G008650.1 Cma09g00865 300870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00865 836 PRINTS G protein beta WD-40 repeat signature 592 606 IPR020472 -
Cma09g00865 836 PRINTS G protein beta WD-40 repeat signature 635 649 IPR020472 -
Cma09g00865 836 PRINTS G protein beta WD-40 repeat signature 719 733 IPR020472 -
Cma09g00865 836 SMART WD40_4 651 690 IPR001680 GO:0005515
Cma09g00865 836 SMART WD40_4 694 732 IPR001680 GO:0005515
Cma09g00865 836 SMART WD40_4 608 648 IPR001680 GO:0005515
Cma09g00865 836 SMART WD40_4 569 605 IPR001680 GO:0005515
Cma09g00865 836 SMART WD40_4 520 555 IPR001680 GO:0005515
Cma09g00865 836 SMART WD40_4 795 834 IPR001680 GO:0005515
Cma09g00865 836 SMART WD40_4 741 780 IPR001680 GO:0005515
Cma09g00865 836 Gene3D - 501 836 IPR015943 GO:0005515
Cma09g00865 836 ProSitePatterns Trp-Asp (WD) repeats signature. 719 733 IPR019775 -
Cma09g00865 836 MobiDBLite consensus disorder prediction 105 132 - -
Cma09g00865 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 734 - -
Cma09g00865 836 SMART serkin_6 2 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00865 836 Gene3D Transferase(Phosphotransferase) domain 1 38 304 - -
Cma09g00865 836 SUPERFAMILY Protein kinase-like (PK-like) 40 316 IPR011009 -
Cma09g00865 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 734 IPR001680 GO:0005515
Cma09g00865 836 PANTHER PROTEIN SPA1-RELATED 2 8 836 IPR044630 GO:0009640
Cma09g00865 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 615 653 - -
Cma09g00865 836 PANTHER PROTEIN SPA1-RELATED 3 8 836 - -
Cma09g00865 836 Pfam WD domain, G-beta repeat 697 732 IPR001680 GO:0005515
Cma09g00865 836 Pfam WD domain, G-beta repeat 613 648 IPR001680 GO:0005515
Cma09g00865 836 SUPERFAMILY WD40 repeat-like 524 833 IPR036322 GO:0005515
Cma09g00865 836 Coils Coil 296 316 - -
Cma09g00865 836 ProSiteProfiles Protein kinase domain profile. 1 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00865 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 657 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00865 - - - csv:101205812 1474.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01396 Cma-Chr2:8104971 Cma09g00865 Cma-Chr9:4237452 7.98E-174 dispersed
Cma09g00865 Cma-Chr9:4237452 Cma15g01269 Cma-Chr15:8055396 0 dispersed
Cma01g01208 Cma-Chr1:8752931 Cma09g00865 Cma-Chr9:4237452 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00865 Cma_Chr09 FPKM 7.006905 7.27935 17.381056 17.602179 12.755132 12.943803 12.810868 4.420341 4.651171 4.025838