Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00866 ATGACTGGAGGGTCATTGGGTCTTCGTACGGGAAGCTATGCATCACTGCAGCAACAGCTACAAAATGGTGCTTTACAAAATCCAGCAATTTCACCGTTTGCACACAAGCCTTGGAAACCAAATCTTTCAAGTTCAAGAGAGAGGGAGAGAGTTCTTCCCTTGGTTTGTCGATACTTCGGTCGGAGAAGGGTTGCGATGCTCCTCTTGTTCGTCCTTGCTCTTTTGGTTTTTGTATTTGGATCCTTTGCTGTCAGTAGAGATAACAGTGATTTAAAGACACCTTATGAAGAAACTACACTAAAATATATGATAAATCCTGCTGTTCCAAGAACAAAAGACTTCAAGGATAATATAACTTCTACTCCTGGGAATTTGATTGGAAGTACTGAAAGTTCATCTCTGCTCCCTCCTTCCCGACATTCAAATAGTTCTTTAATCTCTGATTTTTTTCCTCGACATTCCATTCCATCGCCACATCCATGCAGAAACTTTGCGCTTCCTCCGCCAGCTCCAACTAACGGAAAGCGGACTGGAGCACGTCCTTGTTCAGTATGTTATATCCCTGTGGAGCAGGCTATTGCTAGTATGCCAATTGCACCATCAATATCACCCATACTACGCAATTTAACATATATTCATGAGGGAAATCCAAAAAAAACAGAACCACATGGGGGGTCTGATTTTGGTGGATATCCTTCTTTAACACAGCGAAATGATTCTTTTAATATAAAAGAGTCGATGACAGTTCACTGTGGATTTGTTAAAGGAAGTAAACCTGGATATCAGAGTGGTTTCGATATTGATGAAGCCGACCTTTTGGAGTTGGAGGAGTTTCATGAGGTCATTGTTGCATCGGCCATATTTGGAAACTATGATATATTACAGCAGCCTATTAATATTAGTGAAGAATCAAAAAGATTTGTTCCATTCTGCATGTTCATTGATGAAGAGACAGAAGCATTTCTGGAGAATTCTAGACTCTTAGATAGCAGAAAGAGGATTGGCTTGTGGAGAATCATTGTAGTTCGTAATATTCCATATGCTGATTCAAGACGTAATGGCAAGATTCCCAAGCTGCTTCTGCATAGGCTTTTCCCTAACATTCAATACTCAATATGGATAGATGGAAAACTTCAGCTTGCTGTAGATCCATTTCAAATTCTTGAGAGGTTCCTGTGGCGTCAAAATGCAACTTTTGCTATTTCAAGACACTATAAACGATTCGACGTCTTTGAAGAGGCTGTGGCTAATAAAGCTGCTGGAAAATATGACAATTCCTCCATTGATGAGCAGATTGATTTTTATGTTAGCGAGGGTTTAACCCCATATTCTTTGGCTAAGCTTCCTATAACTAGTGATGTTCCTGAAGGATGTGTTATAATTCGAGAACATATTCCTATAACAAATTTATTCACTTGCCTTTGGTTCAATGAAGTCGATCGTTTTACTTCAAGAGATCAGTTAAGCTTCTCAATGGTGAGAGATAAGATAATGTCTAAAGTCAATTGGAGCGTTAACATGTTCTTGGACTGTGAAAGGCGCAATTTTGTAATACAGACATATCATAGAGAAATACTGGAACACATGCCACCGCCTCCTGTCAAACCAGTTATCCGCCGTCCTCCGCCGGTGTCCATTGGCCGTCCTCCGCCGCCTGTTTCTAAGCCTCATATTGTTCTAAAGTCTCCGCCAGTAAAGAGAAATCCTTCCAAGCGGGGAAGAAGTGATAAGAGGTCCAGTTCCAAGCGGCATCGTAAAGTTATTGCTGCACATAGAGAGGAGAATTTGTTCTAA 1794 40.69 MTGGSLGLRTGSYASLQQQLQNGALQNPAISPFAHKPWKPNLSSSRERERVLPLVCRYFGRRRVAMLLLFVLALLVFVFGSFAVSRDNSDLKTPYEETTLKYMINPAVPRTKDFKDNITSTPGNLIGSTESSSLLPPSRHSNSSLISDFFPRHSIPSPHPCRNFALPPPAPTNGKRTGARPCSVCYIPVEQAIASMPIAPSISPILRNLTYIHEGNPKKTEPHGGSDFGGYPSLTQRNDSFNIKESMTVHCGFVKGSKPGYQSGFDIDEADLLELEEFHEVIVASAIFGNYDILQQPINISEESKRFVPFCMFIDEETEAFLENSRLLDSRKRIGLWRIIVVRNIPYADSRRNGKIPKLLLHRLFPNIQYSIWIDGKLQLAVDPFQILERFLWRQNATFAISRHYKRFDVFEEAVANKAAGKYDNSSIDEQIDFYVSEGLTPYSLAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSMVRDKIMSKVNWSVNMFLDCERRNFVIQTYHREILEHMPPPPVKPVIRRPPPVSIGRPPPPVSKPHIVLKSPPVKRNPSKRGRSDKRSSSKRHRKVIAAHREENLF 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4249162 4257508 + CmaCh09G008660.1 Cma09g00866 300871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00866 597 Pfam Protein of unknown function (DUF616) 209 522 IPR006852 -
Cma09g00866 597 MobiDBLite consensus disorder prediction 531 558 - -
Cma09g00866 597 MobiDBLite consensus disorder prediction 567 586 - -
Cma09g00866 597 PANTHER DUF616 FAMILY PROTEIN 1 592 - -
Cma09g00866 597 MobiDBLite consensus disorder prediction 531 597 - -
Cma09g00866 597 PANTHER ALKALINE CERAMIDASE-RELATED 1 592 IPR006852 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00866 - - - csv:101219639 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00866 Cma-Chr9:4249162 Cma12g00727 Cma-Chr12:4318470 1.87E-87 dispersed
Cma13g00644 Cma-Chr13:6092021 Cma09g00866 Cma-Chr9:4249162 0 wgd
Cma18g00368 Cma-Chr18:2001602 Cma09g00866 Cma-Chr9:4249162 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g223 . . . . . . Bma10g00499 Bma13g00955 . . . Cma09g00866 . Car09g00779 . Cpe06g00689 . Bhi09g03417 . . . . . . Cla11g01763 . Cec11g1850 Cco11g1857 Clacu11g1990 Cmu11g1799 . Cone6ag0145 Cone9ag0170 Cone14ag1064 . Lsi04g01334 Csa04g02345 Chy07g00077 . . . Bda05g00771 . . Bpe03g00837 . . . . Cmo09g00855 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003322 2 11 1 2 2 0 1 1 0 1 1 1 1 1 1 1 0 3 1 1 1 1 1 1 1 0 1 6 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00866 Cma_Chr09 FPKM 13.218967 15.477287 8.237411 8.840174 10.223645 7.584941 10.841481 10.394768 10.416141 11.503405