Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00871 ATGGAGGAAGAGACTGTTCAACAGTATCTGTACGATACTCTAAGCCCTCTTTCATTCTCCGCCGTCGCTACCACCGGAAGCGAGGAGCAACTCTCGCCTTCCGATAACCTCGAGCCCTACGCCGTTTTCCGCAACGAGATCTCTCTCTCTACTTCTCATTCTGCTCCGGCCGAGACTGCAGCAACCGAGTTTTTTGCCCTTGATGTTGCTGCTGACAACGTGGAGGAAATTTCGGGGTTTTCTACTCCTTTGGCGGTTACTTCGGTTCAGGAAACTGAGCCTAGGACGCCGGAATGTGAGGATCAGTCGATGCTTGAAAGTGGGTGGTTCCGTGGCAATGGTGGATTCAAGAGCCCTATGCTACAGTTGCATAAAGAAATAGTTGATTTTTGTGAGTTTCTATCTCCAACTGAAGAAGAACGTGTTGCACGAGACAGTGCAGTTGAAAGGGTTTTTAGTGTAGTCAAACACATATGGCCTCACTGTAAGGTTGAAGTTTTTGGATCGTTTCAGACAGGGCTTTATCTTCCAACCAGTGACATCGATGTTGTTATTCTGGATTCAGGCATCCCAAAACCACAACTTGGTTTGCAAGCTCTTTCCAGGGCTTTATCACAAAAGGGAATAGCAAAAAAGATTCAGGTTATTGGAAAGGCTCGTGTGCCAATAATTAAGTTTGTTGAAAAGCAAAGTGGTATATCTTTTGATATAAGTTTTGACGTGCAGAATGGACCAAAAGCTGCTGATTTTATAAAGGGTGCAATCAGTAAGTGGCCTCCTTTGCGTCCTCTGTGTTTGATCTTAAAGGTGTTTTTGCAGCAGAGAGAACTGAATGAGGTATATTCTGGTGGACTAGGTTCTTATGCACTTCTTACTATGCTTATGGCCATGTTGCAGAGTTTCAACGTGTCCCACTCTTCTCTTGAACACAATCTGGGAGTCCTTTTGGTACATTTCTTTGATTTTTATGGTCGCAAATTGAACACTTCTGATGTTGGTGTATCTTGCAATACGGGAGGCATTTTTTTCTCGAAGAGTAACAGAGGATTCATGACAAAAGGACGCCCATTTCTTCTTTCCATTGAGGATCCTCAGGCACCAGATAATGACATTGGCAAGAATTCCTACAATTACTTCCAGATAAGATCTGCATTTGCAATGGCCTTTTCAATCTTGACAAATGTTAAGACCATTTTAGGTCTTGGTCCAAACCGAAGTATTCTAGGCACAATAATCCGACCCGATCCAGTCTTGTTGAAGCGAAAAGGTGGCAGAGATGGAGAAGTGACCTTTACTTCTTTACTCCCTGGAGCAGGGGAACCTATACAACAACAACCAGAATATGGGGATGGTCAGGAGATGCTGTGCAATTGGCAGTTCGGCGACGATGAACCATTGCCTCGAGGGAACGACGCATCCAGGAATTTGGATACGCCGTCCTCTAAAAAAAAGAGAAAATCTCGCTGCGAGAAGTCGAGAAATAAGGACAAAGAAAACCATGGGAGTAGTAAGCGCAGCAAAGAGAAGAGTTCGAGGAAGAAACGATGGAGAGAGAACGGGAGTGATGGCAGAAGGTCTCCTTGGAAAAGATAA 1593 44.51 MEEETVQQYLYDTLSPLSFSAVATTGSEEQLSPSDNLEPYAVFRNEISLSTSHSAPAETAATEFFALDVAADNVEEISGFSTPLAVTSVQETEPRTPECEDQSMLESGWFRGNGGFKSPMLQLHKEIVDFCEFLSPTEEERVARDSAVERVFSVVKHIWPHCKVEVFGSFQTGLYLPTSDIDVVILDSGIPKPQLGLQALSRALSQKGIAKKIQVIGKARVPIIKFVEKQSGISFDISFDVQNGPKAADFIKGAISKWPPLRPLCLILKVFLQQRELNEVYSGGLGSYALLTMLMAMLQSFNVSHSSLEHNLGVLLVHFFDFYGRKLNTSDVGVSCNTGGIFFSKSNRGFMTKGRPFLLSIEDPQAPDNDIGKNSYNYFQIRSAFAMAFSILTNVKTILGLGPNRSILGTIIRPDPVLLKRKGGRDGEVTFTSLLPGAGEPIQQQPEYGDGQEMLCNWQFGDDEPLPRGNDASRNLDTPSSKKKRKSRCEKSRNKDKENHGSSKRSKEKSSRKKRWRENGSDGRRSPWKR 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4272857 4278408 + CmaCh09G008710.1 Cma09g00871 300876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00871 530 MobiDBLite consensus disorder prediction 491 505 - -
Cma09g00871 530 CDD NT_PAP_TUTase 143 252 - -
Cma09g00871 530 Pfam Cid1 family poly A polymerase 311 369 IPR002058 -
Cma09g00871 530 Pfam Nucleotidyltransferase domain 150 239 IPR002934 GO:0016779
Cma09g00871 530 SUPERFAMILY PAP/OAS1 substrate-binding domain 259 397 - -
Cma09g00871 530 PANTHER POLY(A) RNA POLYMERASE 94 513 IPR045862 GO:0004652|GO:0031499|GO:0043631
Cma09g00871 530 MobiDBLite consensus disorder prediction 457 530 - -
Cma09g00871 530 Gene3D Beta Polymerase, domain 2 136 244 IPR043519 -
Cma09g00871 530 MobiDBLite consensus disorder prediction 513 530 - -
Cma09g00871 530 PANTHER INACTIVE NON-CANONICAL POLY(A) RNA POLYMERASE PROTEIN TRF4-2-RELATED 94 513 - -
Cma09g00871 530 Gene3D - 120 394 - -
Cma09g00871 530 SUPERFAMILY Nucleotidyltransferase 120 271 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00871 K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] - csv:101206043 872.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00945 Cma-Chr8:5889640 Cma09g00871 Cma-Chr9:4272857 3.11E-14 dispersed
Cma09g00871 Cma-Chr9:4272857 Cma14g02159 Cma-Chr14:14805213 8.71E-27 dispersed
Cma09g00871 Cma-Chr9:4272857 Cma06g00951 Cma-Chr6:6418032 1.05E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g231 . Blo03g01544 . Bda09g00502 . Bpe08g01027 . . . . . Cma09g00871 . Car09g00783 Sed07g2511 Cpe06g00694 . Bhi09g03406 Tan01g4404 Cmetu07g1473 . Hepe01g1380 Mch11g1076 . Cla11g01768 Cam11g1834 Cec11g1855 Cco11g1862 Clacu11g1995 Cmu11g1804 Cre11g2212 Cone6ag0140 . . . Lsi04g01330 Csa04g02350 Chy07g00083 . . . . . . . Bma07g01180 . . . Cmo09g00859 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012201 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00871 Cma_Chr09 FPKM 6.358788 8.105343 10.315719 9.623477 16.369831 15.54119 15.179414 15.314774 16.501295 16.382547