Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00880 ATGAACAAATTCGTGGACGAAAACGACGACGAAGAGTGTTTTTACGAGTCCCTTGATCGCATTGCTTCCTCAAGTTCTTGTTCCACTTCCAATTCCGATGACGATAGAGATTCAAATGGAAACTCCCCTAATTATGATTCCGAGCACCCTTTTGCGGTACCCAAATTCCCTATGGCGGTTTCCGACTATGATATTTGGATCTCCGAGCCCGCCTCTGTGTTGGAGCGCCGGCGCCGTCTTCTTCAAGAAATGGGTCTTAGCGGTGACCCTTCTCTCTCGCGAGCTAATACGACCTTGGAATTGGATCATAGTGAAATGGGTGTTGGAGATTTTGGTCGATCGGTGTCGTCGGATTCTTTGAGTAGTCAACAACAGCAGCCCCCTGCAATCATCAGCTCAAAATCGGCTTCCGGCAGCGATACTAATAACCAGTGTAATTATTCGTCGTCTATTAATTCTCCTTCAATTTTTTCATTTCATTCTGTCAATGAAACCATCACTTCATTTGCAAATAGCTATAATCCTGTAGTCGTTAAGTCCCAAAGCTGTAAGAGCGAGGGAGTTCCATTGGTTGCTTTAGCTGCTTCACAGCACAAGCCGCCATCTGGGAAAAACAGTAGATGGGTGGATGAGATTCGAAGTGATTCCTTGATTGTGAGTACCAATTCTGATCCTGATCCATCTTCGATGTCCCAGAACGGCGTGAATCGACGACAGGTTAGCGAGGATTCGCATTGTTCTACTAGTGAGAAGGTCAATGAGAAAGTCTGTACTATCAAAGATCTTGACAATGGGAAGGAGTTTGTTCTGAATGAGATTACTGAAGATGGAATGTGGAACAAGCTGAAGGAAGTGGGCACTGGGAAACAGTTGACCATGGAGGAGTTTGATAAATGTGTTGGCCATTCACCCATTGTTCAAGAACTGATGCGAAGGCAGATTGTGGAGGATGGTTGTAATGAAAACGTCGATTTAAACGTGAATGGGGATATTGGTAGCAGTTCGAAGTTGAAAAAGAAAGGAGGCTGGTTTAAGGGTATAAAGAGTGTCACTGGCACGGTGAAGGGTCAAAAGGAGAGGCGTAGCAGTGACGAGAGGGATACATCGTCTGAGAAGGGTGGACGGAGGTCGAGCTCTGCAACAGATGATAGCCAGGATGTTTCCTTTCATGGACCAGAGAGAGTAAGAGTTAGGCAGTATGGAAAATCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCTCACACTGGCTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGCGCTGGAGAGGACCGTATCATTCACGTTTGGCAGGTCATTGAGTCGGAGAAAAAGGGCGAACTACTGATGGAGAAACCAGAAGAAGGGAATTTGAGTTTCTTATTTGCAGCTAACGAGTCGCCCGAGCCAACTTCATTATCTCCAAATGTGGATAGCTATCATGAGAAAAAGAGAAGAGGGAGATCTTCCATTAGCCGTAAATCAGTGAGCTTGGAACAAATTATAGTGCCGGACACTGGGCATCTCGATGTCGTGCTCGACCTATCTTGGTCCAAATCTCAGCATTTGCTCTCATCTTCAATGGACAAAACTGTACGGCTCTGGCACTTATCAAGCAATTCCTGTCTCAAAATCTTTTCTCACAGTGATTATGCTATTAGCAAGTTTGTTTCTGACGTGTACCCTGCTGCAGTAACTTGCATCCAGTTCAATCCTATTGACGATCGATACTTCATTAGTGGATCATTAGACGCTAAAGTTCGTATATGGAGTATCCCAGATCGTCAAGTCGTTGATTGGAGCGACTTGCATGAGATGGTGACCGCTGCTTGCTATACGCCTGATGGCAAGTTTGCTCCAGGAAGTTCTACAGAAGTGCTCATTACGTCTGCAGATTCGCGCATCCGATTGGTCGATGGAGTTGATTTGGTCCAGAGATTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCGGCCTGCCTTTCGGCGAACGGCAGGTATGTGATATCAGCCAGTGAGGATTCTCATGTGTACATATGGAAGCACGAAGCTGATTCTCGACCTAGTAGGAGCAAAGGAGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCAGGATGTCTCTGTTGCTATTCCTTGGCCTGGAACGGGCGACATATGGGGACTTCATGACGATTTTTATGGAGATTACGACAATGTGATTGAAAATCATCTCGACGAAGTCTCATCCGCTAACCATCCCCCTTCACCTGTGGAGGTAGAAAATGGCAGTGAGGATTCACTATTAGCTTCTGGTTGCACAAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACCAACAGCTACTTCTTCGACAGAATCGCAGCAACTCGGCCTGAGGAAAAGCTCGTTCCGAACACTCAGATTAACCGTAGTCCTCATTCCAGTTTGGACATTGGCCATGGAATGTTTGAAGGCTCGCCGGGATGGGGTATGAATCAAGTTCCTTGTTACCCTATGCTTGTGCTCGTCGGCGATACCGACACCGACACCGACACCAACACCGACGAGCATGTCCGGTGGGAAAAAACTAAGTTTGTGGTGAACGTTAACTGTTTGACAAAATGCCAGAGAGAATTGAACCAGCAGATTGGTGCAATCAGGGCTCAGACTACCGCTACCATAGCTCCAGAAGTTAACAAAGCTGCTCCAGATGGGAAGAAAACTCTTAGAAAGGGCAGTGTTGTGATCACTGGAGCCTCTTCTGGGTTGGGTTTAGCCACAGCTAAGGCTCTGGCTGAAACTGGAAAATGGCATGTTATTATGGCTTGCAGGGACTTTCTCAAGGCTGAAAGAGCTGCCAAATCTGCTGGCATTAGCAAGGAAAACTACACTGTTATGCATTTGGACCTTGCCTCGCTCGATAGCGTCCGACAGTTTGTCGATAACTTCAGGCAGTCGGGCCGGCCGCTTGATGTGTTGGTGTGCAATGCTGCTGTTTATCTTCCAACTGCCAAGGAGCCTACCTTCACTGCTGAAGGTTTTGAACTTAGTGTCGGAACTAACCATCTTGGTCACTTCCTCCTCTCCCGGTTGTTGTTGGAGGATTTGAACAAATCTGATTACCCCTCAAAAAGACTCATCATTGTTGGATCAATAACCGGGAATACTAATACCTTGGCTGGGAATGTTCCTCCTAAGGCTAACCTTGGAGACCTCAGGGGACTTGCTGGAGGACTAAGCGGGCTAAACAGCTCGTCGATGATCGATGGCGGTGAGTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTGTGCAACATGCTCACTATGCAAGAGTTCCATAGGCGGTACCATGAGGAAACTGGCATCACATTTGCTTCCCTCTACCCAGGCTGCATTGCTACAACTGGTGTGTATTGGAGCTGGAACAAGAACTCGGCTTCATTCGAGAACCAGCTGTCTCAGGAGGCAAGTGATGCAGAGAAAGCTCGCAGAGTGTGGGAACTGAGTGAGAAACTTGTTGGTTTAGCTTAA 3549 46.69 MNKFVDENDDEECFYESLDRIASSSSCSTSNSDDDRDSNGNSPNYDSEHPFAVPKFPMAVSDYDIWISEPASVLERRRRLLQEMGLSGDPSLSRANTTLELDHSEMGVGDFGRSVSSDSLSSQQQQPPAIISSKSASGSDTNNQCNYSSSINSPSIFSFHSVNETITSFANSYNPVVVKSQSCKSEGVPLVALAASQHKPPSGKNSRWVDEIRSDSLIVSTNSDPDPSSMSQNGVNRRQVSEDSHCSTSEKVNEKVCTIKDLDNGKEFVLNEITEDGMWNKLKEVGTGKQLTMEEFDKCVGHSPIVQELMRRQIVEDGCNENVDLNVNGDIGSSSKLKKKGGWFKGIKSVTGTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHTGSIWTIKFSLDGKYLASAGEDRIIHVWQVIESEKKGELLMEKPEEGNLSFLFAANESPEPTSLSPNVDSYHEKKRRGRSSISRKSVSLEQIIVPDTGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKIFSHSDYAISKFVSDVYPAAVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKFAPGSSTEVLITSADSRIRLVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGTGDIWGLHDDFYGDYDNVIENHLDEVSSANHPPSPVEVENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRIAATRPEEKLVPNTQINRSPHSSLDIGHGMFEGSPGWGMNQVPCYPMLVLVGDTDTDTDTNTDEHVRWEKTKFVVNVNCLTKCQRELNQQIGAIRAQTTATIAPEVNKAAPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGISKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLSGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGVYWSWNKNSASFENQLSQEASDAEKARRVWELSEKLVGLA 1182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4318241 4328406 - CmaCh09G008800.1 Cma09g00880 300885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00880 1182 Pfam WD domain, G-beta repeat 516 545 IPR001680 GO:0005515
Cma09g00880 1182 Pfam WD domain, G-beta repeat 665 691 IPR001680 GO:0005515
Cma09g00880 1182 Pfam WD domain, G-beta repeat 415 447 IPR001680 GO:0005515
Cma09g00880 1182 Pfam WD domain, G-beta repeat 552 601 IPR001680 GO:0005515
Cma09g00880 1182 MobiDBLite consensus disorder prediction 106 146 - -
Cma09g00880 1182 MobiDBLite consensus disorder prediction 354 379 - -
Cma09g00880 1182 PRINTS G protein beta WD-40 repeat signature 588 602 IPR020472 -
Cma09g00880 1182 PRINTS G protein beta WD-40 repeat signature 533 547 IPR020472 -
Cma09g00880 1182 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Cma09g00880 1182 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 555 IPR001680 GO:0005515
Cma09g00880 1182 MobiDBLite consensus disorder prediction 219 247 - -
Cma09g00880 1182 Pfam short chain dehydrogenase 919 1061 IPR002347 -
Cma09g00880 1182 MobiDBLite consensus disorder prediction 219 242 - -
Cma09g00880 1182 MobiDBLite consensus disorder prediction 352 400 - -
Cma09g00880 1182 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 915 1142 IPR005979 GO:0016630
Cma09g00880 1182 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 6 627 - -
Cma09g00880 1182 CDD LPOR_like_SDR_c_like 916 1181 - -
Cma09g00880 1182 MobiDBLite consensus disorder prediction 476 498 - -
Cma09g00880 1182 PRINTS Glucose/ribitol dehydrogenase family signature 1126 1143 IPR002347 -
Cma09g00880 1182 PRINTS Glucose/ribitol dehydrogenase family signature 918 935 IPR002347 -
Cma09g00880 1182 PRINTS Glucose/ribitol dehydrogenase family signature 993 1004 IPR002347 -
Cma09g00880 1182 SMART WD40_4 549 601 IPR001680 GO:0005515
Cma09g00880 1182 SMART WD40_4 650 691 IPR001680 GO:0005515
Cma09g00880 1182 SMART WD40_4 409 448 IPR001680 GO:0005515
Cma09g00880 1182 SMART WD40_4 505 546 IPR001680 GO:0005515
Cma09g00880 1182 SMART WD40_4 604 649 IPR001680 GO:0005515
Cma09g00880 1182 MobiDBLite consensus disorder prediction 114 146 - -
Cma09g00880 1182 Gene3D - 631 716 IPR015943 GO:0005515
Cma09g00880 1182 Gene3D - 497 630 IPR015943 GO:0005515
Cma09g00880 1182 Gene3D - 352 480 IPR015943 GO:0005515
Cma09g00880 1182 PANTHER WD REPEAT DOMAIN 44 6 627 IPR040324 -
Cma09g00880 1182 PANTHER WD REPEAT DOMAIN 44 627 839 IPR040324 -
Cma09g00880 1182 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 914 1148 IPR036291 -
Cma09g00880 1182 SUPERFAMILY WD40 repeat-like 414 694 IPR036322 GO:0005515
Cma09g00880 1182 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 449 IPR001680 GO:0005515
Cma09g00880 1182 MobiDBLite consensus disorder prediction 21 51 - -
Cma09g00880 1182 MobiDBLite consensus disorder prediction 21 46 - -
Cma09g00880 1182 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 602 IPR001680 GO:0005515
Cma09g00880 1182 Gene3D - 907 1182 - -
Cma09g00880 1182 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 549 - -
Cma09g00880 1182 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 627 839 - -
Cma09g00880 1182 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00880 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1375.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01196 Cma09g00880 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00428 Cma-Chr3:4547825 Cma09g00880 Cma-Chr9:4318241 8.80E-134 dispersed
Cma07g00983 Cma-Chr7:4752668 Cma09g00880 Cma-Chr9:4318241 1.12E-136 dispersed
Cma09g00880 Cma-Chr9:4318241 Cma15g01305 Cma-Chr15:8225461 5.90E-84 dispersed
Cma01g01197 Cma-Chr1:8693781 Cma09g00880 Cma-Chr9:4318241 0 transposed
Cma20g00189 Cma-Chr20:908792 Cma09g00880 Cma-Chr9:4318241 2.67E-166 transposed
Cma01g01196 Cma-Chr1:8686397 Cma09g00880 Cma-Chr9:4318241 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00880 Cma_Chr09 FPKM 6.858411 5.821643 8.958008 8.361044 77.623978 83.174446 74.482498 11.640503 12.085291 10.760397