Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00882 ATGGATCCTCGCACCCGTCTGGATCATGCTCTGTTTCAGCTCACTCCGACCAGAACCAGATGTGATCTGGTTATCTCCGGCATTGGAGGTGCGACTGAGAAACTGGCATCTGGGCTTCTTCAGCCGTTTATCTCCCACCTCAAATGTGCTAAGGATCAGATTTCCAAGGGGGGTTACTCCATTACTCTTCGCCCTGTTGCAGGATCAAACGCTTCTTGGTTCACTAAGGGCACCCTTCAGAGATTTGTGAGATTTGTTAGCACTCCTGAAGTTCTTGAGAGATTTGTTACTACAGAGAAGGAGATTGTTCAGATTGAAAGTTCTATGTCCACAGATGCAGAAGGAAACACAACGACTGCTGATTGGAACTCGAAAAAATCTAGCCCCACCTCGAGGGTGAAGGGAAATTCGGATGAATATAACGACGATGCTGCGTCGAAGGAGAATCCCAAGGTCTGCCTTCAGCGTGTTCTAGAGACTCGAAAAGCAGTGCTGCACAAAGAGCAAGCAATGGCTTATGCCCGTGCTTTAGTCGCAGGATATGAGCTGGATCATATTGATGATCTTATATCTTTTGCTGATGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTATAAACTTTATGGACTTGTGCAAACAAAAGAATGAAGATAAACACTGGATAGACGAAATAGCAGCTATGCAGGCATTCTCCCAGCCAGCATTTCCTTACTCAGAAACTTCCGGTATTGTACTAGCCGGTGAAGACAACGAAACTAACGTCAATGCTCAAGCACCAAGATCGGATTCGACTGCAAGTCAAGGAAGTTTGGATAACAATCAAGACGGTAGCCTTCCAAAATCGGCGCAAATGCCATCGTTGAATGGGAAAGCTCAAATGCCAATGACATGGCCGAATCATCTTCCTCAGTATATGCACAACTTTCATGGTCCATATCAAGGATATCTCTTGCCTGGAATGCAGATGCCACCACCATATTACCCAGGGAATATGCAGTGGCGATCCAATGCCGATGACTCGAGTCTTGTTTCTGATCGAGAACCGAATGGTCGTAGGAGTTCTAAATCTCATAAGATGAAGAAGAAACTTTCACATAAGGAGGTTCCCAGAACTTCAGAACAAGAAGGAACTACTGAGTCAAGTGAATCCAGTGTTGACAGTGAATCAGATGAACACTCCGATGACGAGAGGATACGTAAGAAGCGGCATGGAAAGAAGTCCTCACGAACGGTTGTTATTCGAAATATCAATTACATAACCTCAAAGAAGAATGGTGATAAGGGCAGCCACTCAGAGGATGATTCATCTGATGAGGGTGAGTTTATTGATGGGGATTCCATCAAACAGCAGGTAGAGGACGCGGTCGGGACGTTGGAGAGAAGACATAAACCAACGAGTCGACGCCAAAAGAAACAGAATGGCTATGGCAATGCTGATGGCTTAAATGATTCTGCAGGACAGGAGACTAACCGGGTGTCGAACAATTCCGAGGGAGAAAAGATCAGTAGCCCATGGGATGCTTTCCAGAGTCTTATTATGCGAGAAAACGAGCCTGATAACTCGGACAAACTGTCCTCGATTCAGAATCAAGACATCCATTTTACAGAATCAGAGAAAGCACCAAGACAGCGTGAAGTTTCAAGTGATTCTTTCATCATGACAGACAGGAACTCAGCTAATGAAGGAAGAACACATATTGAAAACTTTGAAGCTGGTGATGTTTCCAACCCAATTAACAGGAGAGAAAGCACATATGAAGAGCTATTATTTTCACAAAGAGGCGGAGAATCGAGGAACGATGCACATTCCACCGCGTCCGATTTTACCAACATGTCTTTGAGAATGAAAAATCAAAGAGATGGTGATTGGTTTGTCAGAAATCCAGCTGATAAATCCGACAATCAGTATCACAACATCGGTCCCGGAGTTTACGACACCGACTTCTCTTCATCAGCTCAGGAACATCTCTATGCAGAGAAACACAAAAAAGATGTTTTGGCTGATGACTCTTTCATGATTCAGCCTCGACCAATAGTAGACGACCAATCCAACTTTCAATCGAGACGAAACATAAGCATGGTATCGGACATTATTGGGGATACCAAACAAGAAACCTCAAGAGATGATAAGCCTGCAACTTTTGGTGTCAGTGAACCAGATGACCTTTACATGATGCTCGATCGAGACATAGCTATAGAGCATACCGTAGCATCTTGGACACCTGAAATGGACTATGAAAATAACTTTTCGACCATAGCCAATGGTAAACACAATGATATTGGACCCGACCGTGGTGACGATCACGAGTCACCTGGTTTGGAAAAGAGCAACAAAAATAAAGAATCTGGGAGCAAAGTTTCAAGTAAAGAAGCAAAATCCAAAGCGTTGGGAGGATCTCTTGTTCAATCAAGAACAAGAAAACCAGTTTCTGGTAGCAGAACTATAGTTCATAAGAGCAAATTTGAGAAGGAAGAAGAGACGAGAAAGAGAATGGAAGAACTGGCGATTCAGCGCCAGAAAAGAATCGCTGACCGGAGCACATCGAGTAAATTTGGTAGTGTGAGTTCTAAGCCTGGTGTGTCTAAGATTGAGAAGCCAAAAAGCCAAGCCCAGGTTCAAGAAGATAAGAAGTCACCTAAGCCTGTGCTTAGGAGTTCGACCATAGATCGCCTTGCAACGGCTCGTACACCTCAGAAGTTGTCTGTAACTCGATCGCCATCAGGTCAACCAAAAAAGGCGATCTCTAGTGCAAATGGCATTAACACTCCTACCACATCAGGAAAGCTCCTGAAAACCGACAGTAAGAACCTTATCTCGAACAAAGTAAAACCTTCCAATTTAAAAAACGGGCACAAGAAATTGAGCAAGGCACTTTCTTCTGATTCTTATGGTCAGACAACAACGGATGGCAAGAACGACGAAGCAGCATTGCCAGCTGAGTCGACGATATCGATACCGATTGCAACTCAACCGATCGACAACGTCGATGACGATATGGAAGATGTTAAGGAGCTACACACTACCCATTCAGTGGAGAAAAATGATGAAACTTTTCTTAGTAATTCAAACGACAAGGTTTTGTCTGTGCCAATTGAAGAACATACAGATTTAGTGGTCTTGTCCAATAAAGCCTTAGACCCTTCAGTTATGAACACTGGAGAAAATGGGGTAGCTGATCATATTGAAGCCACACCCGAAATTTCTGAGATCGAGATCGAAATCTCGACTCCTCCTCCCTCGACGAACGACATGATCTCGGAGTATACGATACACTCGAGGAAGAAATGGATGAGTGATGAAAACTCTCCCAAAGCACCTAAAGGGTTCAGAAAGCTACTCTTTTTCGGACGTAAAACCCGAAACACGTCCACAGATTGA 3381 44.04 MDPRTRLDHALFQLTPTRTRCDLVISGIGGATEKLASGLLQPFISHLKCAKDQISKGGYSITLRPVAGSNASWFTKGTLQRFVRFVSTPEVLERFVTTEKEIVQIESSMSTDAEGNTTTADWNSKKSSPTSRVKGNSDEYNDDAASKENPKVCLQRVLETRKAVLHKEQAMAYARALVAGYELDHIDDLISFADAFGASRLREACINFMDLCKQKNEDKHWIDEIAAMQAFSQPAFPYSETSGIVLAGEDNETNVNAQAPRSDSTASQGSLDNNQDGSLPKSAQMPSLNGKAQMPMTWPNHLPQYMHNFHGPYQGYLLPGMQMPPPYYPGNMQWRSNADDSSLVSDREPNGRRSSKSHKMKKKLSHKEVPRTSEQEGTTESSESSVDSESDEHSDDERIRKKRHGKKSSRTVVIRNINYITSKKNGDKGSHSEDDSSDEGEFIDGDSIKQQVEDAVGTLERRHKPTSRRQKKQNGYGNADGLNDSAGQETNRVSNNSEGEKISSPWDAFQSLIMRENEPDNSDKLSSIQNQDIHFTESEKAPRQREVSSDSFIMTDRNSANEGRTHIENFEAGDVSNPINRRESTYEELLFSQRGGESRNDAHSTASDFTNMSLRMKNQRDGDWFVRNPADKSDNQYHNIGPGVYDTDFSSSAQEHLYAEKHKKDVLADDSFMIQPRPIVDDQSNFQSRRNISMVSDIIGDTKQETSRDDKPATFGVSEPDDLYMMLDRDIAIEHTVASWTPEMDYENNFSTIANGKHNDIGPDRGDDHESPGLEKSNKNKESGSKVSSKEAKSKALGGSLVQSRTRKPVSGSRTIVHKSKFEKEEETRKRMEELAIQRQKRIADRSTSSKFGSVSSKPGVSKIEKPKSQAQVQEDKKSPKPVLRSSTIDRLATARTPQKLSVTRSPSGQPKKAISSANGINTPTTSGKLLKTDSKNLISNKVKPSNLKNGHKKLSKALSSDSYGQTTTDGKNDEAALPAESTISIPIATQPIDNVDDDMEDVKELHTTHSVEKNDETFLSNSNDKVLSVPIEEHTDLVVLSNKALDPSVMNTGENGVADHIEATPEISEIEIEISTPPPSTNDMISEYTIHSRKKWMSDENSPKAPKGFRKLLFFGRKTRNTSTD 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4340783 4347063 - CmaCh09G008820.1 Cma09g00882 300887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00882 1126 MobiDBLite consensus disorder prediction 332 549 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 817 846 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 386 402 - -
Cma09g00882 1126 PANTHER COP1-INTERACTING PROTEIN 7 1 1119 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 411 425 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 107 145 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 255 294 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 107 135 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 760 789 - -
Cma09g00882 1126 Coils Coil 1124 1126 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 869 884 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 751 986 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 953 973 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 702 716 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 697 718 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 799 813 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 426 448 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 255 295 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 471 504 - -
Cma09g00882 1126 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1119 - -
Cma09g00882 1126 MobiDBLite consensus disorder prediction 890 946 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00882 - - - mcha:111010382 1605.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01195 Cma09g00882 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01077 Cma-Chr8:6706199 Cma09g00882 Cma-Chr9:4340783 5.94E-86 dispersed
Cma09g00882 Cma-Chr9:4340783 Cma17g00155 Cma-Chr17:778455 7.47E-87 dispersed
Cma01g01195 Cma-Chr1:8674025 Cma09g00882 Cma-Chr9:4340783 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00882 Cma_Chr09 FPKM 18.219379 20.349863 36.382767 36.146057 24.519062 23.777905 21.887045 5.404116 5.055293 5.082277