Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00890 ATGGTGAAAATGAAGCTTGTTTCAATGTTTCTGGTTCTGTCTGGCGTATTGTTCATGTGTATTGGATCTTGCGCCGCTTTCACTCCCATTGATAATTATTTGATATCATGTGGTTCTACACAAAACATCACGTTCCAAGGAAGAACTTATGTTCCTGATTCTGGACATTCGTTGTTCGCCATTGATGGTGGAAGCTCTGTTGTTGTTAGTTCTAAAGGCACAAGTGAGGCATCTCCAATCTATCAATCTGCTCGGGTTTTCACCGGCATTGCTTCGTATAAATTCGATATCAAGAAAGAAGGTCGGCATTGGGTTCGGTTGTACTTTTATCCTATTCCGAAGTCGGAGCGGAATCTGGCGTCTGCGTCGATTACTGTTGTTACTGAGAAGTTTGTGTTGTTGAATAACTTCACTTTCAAGAACTATAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTCGGATTCCTTGACGCTTACTTTCATCCCGTTTAATGGTTCGGTATCGTTTGTTAATGCGATCGAGGTTGTTTCGATGCCTGATGAGCTGATACCTGACCAAGCATTGGCTTTGAATCCATCTTCTCCGTTTAGCGGCATCTCTGAACTTGCTTTCGAAACTGTTTATCGACTAAATATGGGAGGTCCTTTACTCACTTCGCAAAATGATACACTTGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAATAGTTCTGCAGTGAATGTCTCGGCCAACCCGGGGAGTATAAAATATCATGCCGGTGTTACACCAGAAACTGCACCGAACTTGGTTTATGCTACTGCCGATGCCATGGGAGACCCGAATGTACCGAATGTGAACTTTAACTTGACTTGGGTTTTCTCTGTTGAGCCAAATTTTCAATACTTTGTTCGAGTACACTTTTGTGATATCATGAGCAAGGCTCTTAATAGTCTGGTTTTCAATCTATACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCGTCGTTAACGGGTGACTTGGGCGTGCCTTATTACAAAGACTTTATTTCAAACTCAGCAGATTCGGCTACTTTGACTGTTAGTGTCGGTCCAGATACGATGGCAGACATCACCAATGCAACCATGAATGGCTTGGAGATCATGAAAATAAACAATCGAGCCGGGAGCTTGGATGGAACTTTGTCCGTTGAAAGCCTTTTGCCGAATGCACCCTCGAAGAAGAACAATATAGCAATAATTGTTGGTTCTGTCTCGGGAGCTGTAGTAGCCATTGCTTTGCTCGTCTTGTGTTACTGCTGTTTCGTACGTCGCAAGTCGAAGCCTACTCAACCAGCACATCCATGGCTTCCTTTGCCCTTATATGGGAACTCTCAAACCATGACAAAAGTGTCAACCACTTCTCAAAAGAGTGGAACTGCAAGCTTCCTTTCATTGACTTCCTCCAGTCTTGGCAGATTCTTCTCGTTTCAGGAAATTCTCGATGCTACGAACAAATTCGACGAAAATCTACTCCTTGGAGTTGGCGGTTTTGGTAGAGTTTACAAGGGAACACTTGAAGATGGTGTAAAGGTTGCTGTTAAAAGAGGTAACCCCAGATCAGAACAAGGTCTTGCTGAATTTCGAACCGAAATCGAAATGTTATCAAAGCTCAGACATCGTCACCTAGTGTCTCTTATTGGCTACTGCGACGAACGATCAGAAATGGTTCTTGTCTACGAATACATGGCAAATGGACCGCTCAGGAGTCACTTGTATGGAACCGATCTACCACCGTTGTCGTGGAAGCAACGACTTGATATTTGCATCGGTGCTGCGAGAGGGCTTCATTATCTTCACACTGGTGCAGCACAAAGCATTATACACCGAGATGTCAAAACCACGAACATTCTCTTGGACGAGAATTTCGTCGCCAAAGTTGCAGATTTTGGTCTCTCAAAAACCGGACCATCTCTGGATCAGACTCATGTTAGTACTGCTGTTAAGGGTAGTTTTGGTTACCTCGACCCCGAATACTTCAGACGACAGCAGCTGACCGAGAAGTCCGACGTATATTCATTCGGGGTCGTGCTAATGGAAGTTCTCTGTACAAGGCCAGCTCTAAACCCTGTTCTGCCTAGAGAACAAGTCAATATAGCAGAATGGGCAATGATTTGGCAGAAGAAAGGCATGCTAGATAACATCATGGACCAAAATCTGGTAGGGAAAGTTAATCCAGCATCACTTAAGAAGTTCGGTGAAACAGCGGAGAAGTGTTTAGCCGAGTATGGTGTCGACAGGCCGTCCATGGGCGACGTCCTGTGGAACCTGGAATACGCTCTTCAGCTCGAGGAAACATCGTCTGCTCTAATGGAACCCGAAGACAACAGCACGAACCACATCCCTACCATCCAACTGACTCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGATGGAGGGAACTCGGGCACCGACGACGACGCAGAAGATGTTGCAACAAGTGCAGTGTTTTCGCAGCTCGTAAATCCTTGTGGGAGATGA 2529 44.4 MVKMKLVSMFLVLSGVLFMCIGSCAAFTPIDNYLISCGSTQNITFQGRTYVPDSGHSLFAIDGGSSVVVSSKGTSEASPIYQSARVFTGIASYKFDIKKEGRHWVRLYFYPIPKSERNLASASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPFNGSVSFVNAIEVVSMPDELIPDQALALNPSSPFSGISELAFETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSANPGSIKYHAGVTPETAPNLVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKALNSLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSATLTVSVGPDTMADITNATMNGLEIMKINNRAGSLDGTLSVESLLPNAPSKKNNIAIIVGSVSGAVVAIALLVLCYCCFVRRKSKPTQPAHPWLPLPLYGNSQTMTKVSTTSQKSGTASFLSLTSSSLGRFFSFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGVKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMVLVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMIWQKKGMLDNIMDQNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDVATSAVFSQLVNPCGR 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4385407 4387935 + CmaCh09G008900.1 Cma09g00890 300895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00890 842 ProSiteProfiles Protein kinase domain profile. 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00890 842 PANTHER OS07G0166700 PROTEIN 19 834 IPR045272 GO:0004714|GO:0006468
Cma09g00890 842 Pfam Protein tyrosine and serine/threonine kinase 506 765 IPR001245 GO:0004672|GO:0006468
Cma09g00890 842 CDD STKc_IRAK 507 772 - -
Cma09g00890 842 Gene3D - 206 387 - -
Cma09g00890 842 Gene3D - 32 183 - -
Cma09g00890 842 SMART serkin_6 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00890 842 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Cma09g00890 842 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Cma09g00890 842 Gene3D Phosphorylase Kinase; domain 1 459 576 - -
Cma09g00890 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cma09g00890 842 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 834 - -
Cma09g00890 842 SUPERFAMILY Protein kinase-like (PK-like) 477 772 IPR011009 -
Cma09g00890 842 Pfam Malectin-like domain 35 385 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00844 Cma-Chr2:4933801 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma03g00655 Cma-Chr3:5523528 Cma09g00890 Cma-Chr9:4385407 2.69E-74 dispersed
Cma03g01452 Cma-Chr3:9096111 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma04g00249 Cma-Chr4:1216602 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma04g01870 Cma-Chr4:9516574 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma09g00890 Cma-Chr9:4385407 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma12g01130 Cma-Chr12:8913915 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma02g00503 Cma-Chr2:2685046 Cma09g00890 Cma-Chr9:4385407 1.76E-167 transposed
Cma01g01189 Cma-Chr1:8611981 Cma09g00890 Cma-Chr9:4385407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68807 PF12819 Malectin_like 1.40E-39 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00890 - - csv:101215627 1540.78