Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00895 ATGATGTTATCTGCATCGCCATCGACGATAGTTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGATGCCTAAAGACTTGCCGCCGGCATTGCCGTCTCGGCCTACTTCCAAGGCTCGGATTCCACCGCTGCGGCGGGCTTTACCCGTTAATTTCAAGGTTAATGGCGACGGTTCCTCTGAGTGCTGTATTAATGGTTTCAATGGAAGGGAAGATCCATTGAGGAAGGAGAATGGTCTGGCTAACTTTGCATTAAGGAGAGTGAAAAGAGATCAAGGCGATGAATCGCCTTACTTGGTTGCTTCAGAGAAGGATAATGAAGATCAAGTGAATGGTCCGTATGGTTCTTATCCAGAAGGGTCTAACTGGGAGGAGATTATCAGCTATTTTCTCCAGAAGAAACTCCGGGTTTGGTGTCAAATTTCATCTGGACAATGGGAGTTAGGAACTATACAATCAAACAGTGGGGCTGAGGCATCTGTCATGCTCTCAAACAATAAGGTTATTAAAGTTTCGACGGTAGATCTTTTACCTACGAATCCCGATATCGTGGAGGGGGTTGATGATCTTGTACAGCTTGGTTATTTGAACGAGCCCTCGGTTGTTAACAGTCTTCAGCAACGATTTTCTCGAGATGAAATTTATTGTAATGCAGGGTCAGTTTTGATTGCTGTTAATCCCTTGAAAGACACTAAACAGTATGGAGATGGATTGATTACAGCTTATAGAGAGAGAGTCATGAATGACCCTCATGTTTATGCTGTAGCAGATGCTGCCTATTCTGGGGTGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGTGAAAGTGGAGCAGGAAAAACTGAGACAGCAAAAGCTGCACTTCAGTACCTGACTGCTCTTGGCGGTGGCAGTGGCATAGTTGATAGAATCCCACGGGCTAACGTTATCCTCGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGCTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCGAGAGTTGTTCAGCTGGTCAATGGCGAGAGATCGTTCCATATCTTCTATCAACTTTGTGCTGGAGCGCCATCTACACTTAAAGAGAAATTGAATATCAGAATGGCCAGTGAGTACAGTTACCTTAATCACAGTGAATGCCTCGTGATCGGTAGTGTGGACGATGCACAGAAATTTCATGTTCTTGTGGAAGCCTTAGATATGCTTCAATTCACAAAAGAAGATCAAGAGCATGCATTTCGTTTGCTTGCTGCAGTTTTGTGGATAGGGAACATTACGTTTCAAACGATTAATAGTGAAAATCATGTGGAGGTCGTCATGGCTAATGAAGCGATCGCAAACGCTGCCGAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCAACTCCAACATGCAATCGGACATTACGACAGGCAACCGATGCAAGAGATGCATTGGCAAAATTCATTTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAAGGGAGCACTCTGGAAGATCCATAAATATCCTCGACTTCTATGGGTTTGAGTCACTTAAGAAGAACGGCTTCGAACAGTTTTGTATCAATTATGCAAACGAAAGACTGCAGCAGCATTTTATTCGGCACCTGTTCAAACTTCAGCAGGAGGACTACGAATTTAATGGGGTCGATAGCACCAAACTCAACTTCAAAGACAATCAAGAGTGTTTGAATCTTATCGAGAAGAAACCTATCGGAGTTCTAGCTTTGTTGGACGAAGAGTTGAGTTTTCCCAAGGCTACAGATCTGACATTTGCTAATAAACTAAAGCAACACTTCAAATCTCATCCTCGCTTTAAAGGCGAGAGAGGCAGGGCTTTTGGCGTTCGCCATTATGCTGGAGAGGTTGTATACGATACCAATGGGTTTTTGGAAAAGAATAGAGATATGCTGCATTCAGATTCCATCCAACTCTTTTCATCATGTTCTTGCAAGCTACTGCAATTATTTGCCTCAAAAATGGTTAACTATTCCCACAAACCAACAGTTTCAATGTGTTCTACAGAAGTAGTACAATCCCCTGAGCCAGGCGCTGGTACCAAGTACAAGGTTCTACTATGTGACCTATTTCGTAAATTGGAGCGCACCAGCCATCATTTCATTTGTTGCATAAGACCAAACAGGAATCAAGTTTGTGGCGTATTCGAGGAGGACCTCGTCTTACAGCAGCTTAGATACTCTGGAATTTTGGAGGTTGTCAGAATTTCAAGATCTGGTTATCCTACCAGAATGATGCATCAAGAATTTGCTGAAAGGTTCGGATTCTTCCTTAAAGAAACTGGTGTATCTCGAGATCCGTTGAGTACATCAATGGCTGTTTTGCAACGATTTAACGTCCACCCCCATATGTACCATGTTGGTTATACCAAGCTATTTTTCCGAGCTGGGCAGATTAGGGCATTGGAGGAAAGGAGGAAGCAAGTTGTACAAGGCGTCCTAGCGGTTCAAAAGTACTTTCGTAGTTGCCATTCCCGTGGCCACTTCCTTCAACTTAAGCAAGCAGCAACTACCTTACAATCACTTATTCGTGGCGAAAATGCCAGAAGGAGATGTACCGTTAATGTGCCGAGGTTCTCATTCGTTGTTTATGCTTCCAGTGTTCCTAAGAAAGTTTACGAGCTGCAAGCAGTCATACGAATACAATCGGCTATACGTCGATCGTTGGCTCGAAAGCATTTCAAGAGCATACGGAGCTCTTTTCGAGAAAACAGAATGTCTAAACTGAACGCAGACAGGAGAGCTTCAGAGGACAAACTTCAAGAACAGGTTGAATCCCTAACAACAACTGTGGGTGAGCTTCAAAAGAGGGTTGTGATGGCAGAAGCAGCCATGGAGAAAAAGGAAGAGGAAAATGCTGCACTGAGGGAGAAAGTAAAGCAATTTGAGTGTATGCGGTCAGAATATGATGCCAAGATGAAATCCATGGAGGATATGTGGCAAAAGCAGACGGCTTCTTTGCAAATGAGTCTTGCTGTTGCTAAAAGGACTCTTGCTGCTGCTGAAAATGTAGCCTGTCCGCTCGGAAGAGTTGATGTAGCTAATTCACCGCCTCACTATTACGATTCTGAGGATATGACGTCGATGGGATCTCGAACTCCCGGTGGTACCACGCCTGTAAAAGCCTTTGGAATTTCTGAGGTTGGAGCAGGGCGAGAAATGAACGGTGCTTTATTTGCAGTGAGCACTCTTGTAAGGGAATTTGAACAGAGAAGAATCGCATTTGATAACGATGCGAAAGCTTTAATTGAATCAAAATCAAGTCATGCACAAACACGGTCTAATATGAATCCAGAAGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCATGGAAGAAAGAGTACAAAGTAAGATTACGGGAAATGAAAGGAAAGGTTCATAAATACGGTCATTTTGAGGTCGATAAACTTCGTCGAAAATGGTGGGGGAAGTTGAGCTCAAGATCATCATCATAG 3603 43.1 MMLSASPSTIVRSSLEEMLDSLRRRDEIEMPKDLPPALPSRPTSKARIPPLRRALPVNFKVNGDGSSECCINGFNGREDPLRKENGLANFALRRVKRDQGDESPYLVASEKDNEDQVNGPYGSYPEGSNWEEIISYFLQKKLRVWCQISSGQWELGTIQSNSGAEASVMLSNNKVIKVSTVDLLPTNPDIVEGVDDLVQLGYLNEPSVVNSLQQRFSRDEIYCNAGSVLIAVNPLKDTKQYGDGLITAYRERVMNDPHVYAVADAAYSGVMQDEVNQSIIISGESGAGKTETAKAALQYLTALGGGSGIVDRIPRANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHIFYQLCAGAPSTLKEKLNIRMASEYSYLNHSECLVIGSVDDAQKFHVLVEALDMLQFTKEDQEHAFRLLAAVLWIGNITFQTINSENHVEVVMANEAIANAAELMGCSPNELKLVLSTPTCNRTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRREHSGRSINILDFYGFESLKKNGFEQFCINYANERLQQHFIRHLFKLQQEDYEFNGVDSTKLNFKDNQECLNLIEKKPIGVLALLDEELSFPKATDLTFANKLKQHFKSHPRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDMLHSDSIQLFSSCSCKLLQLFASKMVNYSHKPTVSMCSTEVVQSPEPGAGTKYKVLLCDLFRKLERTSHHFICCIRPNRNQVCGVFEEDLVLQQLRYSGILEVVRISRSGYPTRMMHQEFAERFGFFLKETGVSRDPLSTSMAVLQRFNVHPHMYHVGYTKLFFRAGQIRALEERRKQVVQGVLAVQKYFRSCHSRGHFLQLKQAATTLQSLIRGENARRRCTVNVPRFSFVVYASSVPKKVYELQAVIRIQSAIRRSLARKHFKSIRSSFRENRMSKLNADRRASEDKLQEQVESLTTTVGELQKRVVMAEAAMEKKEEENAALREKVKQFECMRSEYDAKMKSMEDMWQKQTASLQMSLAVAKRTLAAAENVACPLGRVDVANSPPHYYDSEDMTSMGSRTPGGTTPVKAFGISEVGAGREMNGALFAVSTLVREFEQRRIAFDNDAKALIESKSSHAQTRSNMNPEEEYRKIKVRFEAWKKEYKVRLREMKGKVHKYGHFEVDKLRRKWWGKLSSRSSS 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4423710 4431688 + CmaCh09G008950.1 Cma09g00895 300900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00895 1200 SMART MYSc_2a 186 856 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 Pfam Myosin head (motor domain) 194 843 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 947 IPR027417 -
Cma09g00895 1200 Pfam IQ calmodulin-binding motif 924 943 IPR000048 GO:0005515
Cma09g00895 1200 Pfam IQ calmodulin-binding motif 882 900 IPR000048 GO:0005515
Cma09g00895 1200 Gene3D - 860 903 - -
Cma09g00895 1200 MobiDBLite consensus disorder prediction 26 49 - -
Cma09g00895 1200 PRINTS Myosin heavy chain signature 222 241 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 PRINTS Myosin heavy chain signature 276 301 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 PRINTS Myosin heavy chain signature 318 345 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 PRINTS Myosin heavy chain signature 542 570 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 PRINTS Myosin heavy chain signature 595 623 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 139 188 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 PANTHER MYOSIN 120 1197 - -
Cma09g00895 1200 Gene3D Myosin VI head, motor domain, U50 subdomain 431 531 - -
Cma09g00895 1200 Gene3D - 374 430 - -
Cma09g00895 1200 Gene3D Kinesin motor domain 191 788 IPR036961 -
Cma09g00895 1200 SMART iq_5 921 943 IPR000048 GO:0005515
Cma09g00895 1200 SMART iq_5 879 901 IPR000048 GO:0005515
Cma09g00895 1200 ProSiteProfiles IQ motif profile. 880 908 IPR000048 GO:0005515
Cma09g00895 1200 ProSiteProfiles Myosin motor domain profile. 192 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma09g00895 1200 CDD MYSc_Myo8 206 843 IPR036022 -
Cma09g00895 1200 PANTHER MYOSIN-2 ISOFORM X1 120 1197 - -
Cma09g00895 1200 Coils Coil 965 1013 - -
Cma09g00895 1200 Gene3D - 554 745 - -
Cma09g00895 1200 Gene3D - 789 856 - -
Cma09g00895 1200 ProSiteProfiles IQ motif profile. 922 951 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01262 Cma-Chr4:6450923 Cma09g00895 Cma-Chr9:4423710 0 dispersed
Cma09g00895 Cma-Chr9:4423710 Cma18g00811 Cma-Chr18:7087234 0 dispersed
Cma01g01182 Cma-Chr1:8561028 Cma09g00895 Cma-Chr9:4423710 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00895 K10357 - csv:101210624 1919.82