Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00906 ATGGCAAATCCTACTCTAAAATCCTTCATAACGGCGGCAACTCTGTTTCTGTCTCTGTTTCTCTTCTCTCCGTCGTCTGTGGCTGTTGATTTCTTAACAGCCTCACAAAACCTCACCGGCGCCGCCACTCTGGTGTCGGAGAAAGGGTTTTTCGAACTGGGTTTCTTCAGCACTAGAAATTCCACGAACGTTTACTTGGGAATTTGGTACAAAATCATCCCAATACGTACGATCGTTTGGGTTGCGAACAGGGAAAATCCCATTATTGATTCTTCCGCTGCTGTTCTTAAAATCAACACTACAACGAATATTCTTGTTCTCTTGCAGGATAACTCCGTTGTTTGGCTTGCAAATACGTCGAAACCGGTAGAGATTCCGAAACTCCAGCTCTTGGACAATGGAAATCTGGTTTTGAAGGACGCTAAATCGGAGGTAATTTCATGGCAGAGCTTCGATTATCCAACGGATACATTACTCCCCGGAATGAAGCTTGGATGGGACTTCGAAAATGGAATCCAACGCCGGTTATCAGCATGGAAAAGCTCCGATGACCCATCTCCGGGGAGTTTAACCATGGAAATGATGAACACAAACTACCCAGAACCGGCGATGTGGAATGGCTCGAAAGAGTTCATGAGGAGTGGACCATGGAACGGTCTTCAATTCAGCGCAAAACCCACCTCGGCCTTACCGATTTTGGTCTACAGCTACGTAAACAACAAATCCGAGCTCTCTTACAGCTATGAGCTCATAAACTCCTCATTAATCGGAAGAATGGTGCTGAATCAGACGCTGACGAGAAGAGAGGCATTGATATGGTCGGATTCTGAGAAGATTTGGAAGCTATATGCAACTATGCCGAGGGATTACTGCGATACCTACGGGCTTTGTGGCGCGTTTGGGAGCTGCAACATTGAGCTAACACCAGCTTGTCAATGTCTACAAGGGTTTCATCCAAAAGTGCCTGAGAAGTGGAATTTGATGGATTATGCTGATGGGTGTGTAAGAAATAAGCCTTTGAATTGTTCTTCTACTGATAAAATTGGGTTTGCGCAGATTCCTGGGCTGAAATTGCCTGATACCCATCTAACTTGGGTTAATGAGAGCATGAGCTTAAACGAGTGTAGAGACAAGTGTTTGAGGAACTGTTCTTGTGTGGCGTTTGCCAATACTGATATGAGGGGCTCAGGGAGTGGCTGCGCTATTTGGCTTGGGGATCTTGTTGATATCAAAGTGGTTCGAAGAGGGGGGCAGGATTTGTATGTTAGGATGCTGGCTTCTGAATTGGAGACGAAGAAGAAGAAGACGAGCTCGGTTGTCGTCGGCGTTATCATCGGAGCGACCATTCTGGTGATTGCTGGTCTGGTTTTGCTTGGGTTTTACATCATTAGAAGCAAGAGGAGAAGCCTTGAAGGAATAGGCAAGGATCTTGGACAGCAAGAAGACTTGGAGCTTCCATTCTTGGACTTAGCAACCATATCCAATGCCACAGACAATTTTGCCAGCTACAATAAGCTTGGAGAAGGTGGCTTCGGTGCAGTTTTTCGGGGTAGGCTAGCAGATGGACAAGAAATTGCAGTAAAAAGACTTTCTAGCTATTCGAGACAAGGAACCGAAGAATTTAAGAACGAAGTCATACTCATCGCCAAACTTCAACATCGAAATCTCGTAAAACTTTTGGGTTGCTGCATCGAAGGGGATGAAAAGATGTTGATTTACGAGTACATGCCCAATAATAGTTTGGACTCCTTCATATTTGATACCGATAGAAAGAAGCTTTTAGATTGGTCGAAACGATTCAATATCATATGCGGAGTAGCTCGAGGGATTCTTTACCTTCATCAAGATTCAAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAACGTCTTGCTTGATATCGATATGAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGATCAAACTGAAGGAAATACTCGGAGAGTGGTCGGAACGTATGGGTATATGGCACCAGAATACGCCATTGACGGACAATTTTCCATCAAATCAGATGTCTTTAGTTTTGGGATTTTATTGTTGGAAATTGTAAGTGGAAAGAAGAATCGAGGAATTTTCCGCCCTAACCAAGCTCTCAACCTTATTGGACACGCATGGAAGTTGTGGAATGAAGGAAAACCATTAGAGTTGGTCGACGCTTGCATGGGAGAATCTTATGCTCTATCTGAAGTGTTGCGATGCATTCATGTTAGTCTTTTGTGCTTGCAACAGCATCCCGAGGATAGACCGACCATGTCGAATGTGGTATTAATGCTAAGTAGTGAGAGTACCTTGGCACAACCGAAACAACCGGGATTTTACATGGAAACGGGTCTTGTTGAAGCATATTCTCATTCTAGCAAGAACGAATTTTCTACTAATGAATTAACTATTACGCTCATGGAGGCTAGATAA 2451 43.82 MANPTLKSFITAATLFLSLFLFSPSSVAVDFLTASQNLTGAATLVSEKGFFELGFFSTRNSTNVYLGIWYKIIPIRTIVWVANRENPIIDSSAAVLKINTTTNILVLLQDNSVVWLANTSKPVEIPKLQLLDNGNLVLKDAKSEVISWQSFDYPTDTLLPGMKLGWDFENGIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYELINSSLIGRMVLNQTLTRREALIWSDSEKIWKLYATMPRDYCDTYGLCGAFGSCNIELTPACQCLQGFHPKVPEKWNLMDYADGCVRNKPLNCSSTDKIGFAQIPGLKLPDTHLTWVNESMSLNECRDKCLRNCSCVAFANTDMRGSGSGCAIWLGDLVDIKVVRRGGQDLYVRMLASELETKKKKTSSVVVGVIIGATILVIAGLVLLGFYIIRSKRRSLEGIGKDLGQQEDLELPFLDLATISNATDNFASYNKLGEGGFGAVFRGRLADGQEIAVKRLSSYSRQGTEEFKNEVILIAKLQHRNLVKLLGCCIEGDEKMLIYEYMPNNSLDSFIFDTDRKKLLDWSKRFNIICGVARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIVSGKKNRGIFRPNQALNLIGHAWKLWNEGKPLELVDACMGESYALSEVLRCIHVSLLCLQQHPEDRPTMSNVVLMLSSESTLAQPKQPGFYMETGLVEAYSHSSKNEFSTNELTITLMEAR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4507821 4511787 + CmaCh09G009060.1 Cma09g00906 300911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00906 816 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Cma09g00906 816 Pfam Domain of unknown function (DUF3403) 772 816 IPR021820 GO:0004674
Cma09g00906 816 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Cma09g00906 816 CDD B_lectin 38 154 IPR001480 -
Cma09g00906 816 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Cma09g00906 816 Pfam Protein tyrosine and serine/threonine kinase 503 769 IPR001245 GO:0004672|GO:0006468
Cma09g00906 816 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00906 816 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00906 816 CDD STKc_IRAK 506 771 - -
Cma09g00906 816 PIRSF SRK 2 816 IPR024171 GO:0004674
Cma09g00906 816 Gene3D - 25 151 IPR036426 -
Cma09g00906 816 PANTHER - 32 813 - -
Cma09g00906 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 813 - -
Cma09g00906 816 Pfam D-mannose binding lectin 77 180 IPR001480 -
Cma09g00906 816 SUPERFAMILY Protein kinase-like (PK-like) 486 771 IPR011009 -
Cma09g00906 816 SMART ntp_6 345 424 IPR003609 -
Cma09g00906 816 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Cma09g00906 816 Pfam PAN-like domain 346 410 IPR003609 -
Cma09g00906 816 SMART blect_4 35 154 IPR001480 -
Cma09g00906 816 CDD PAN_AP_plant 339 423 - -
Cma09g00906 816 Gene3D Transferase(Phosphotransferase) domain 1 576 783 - -
Cma09g00906 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cma09g00906 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 185 IPR036426 -
Cma09g00906 816 Gene3D Phosphorylase Kinase; domain 1 466 575 - -
Cma09g00906 816 Gene3D Hepatocyte Growth Factor 341 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01171 Cma-Chr1:8511407 Cma09g00906 Cma-Chr9:4507821 4.37E-07 dispersed
Cma09g00906 Cma-Chr9:4507821 Cma13g00695 Cma-Chr13:6328597 0 dispersed
Cma13g00711 Cma-Chr13:6409064 Cma09g00906 Cma-Chr9:4507821 9.64E-134 dispersed
Cma13g01021 Cma-Chr13:7828480 Cma09g00906 Cma-Chr9:4507821 9.31E-117 dispersed
Cma19g00948 Cma-Chr19:8421147 Cma09g00906 Cma-Chr9:4507821 4.67E-58 dispersed
Cma19g00953 Cma-Chr19:8438217 Cma09g00906 Cma-Chr9:4507821 4.56E-168 dispersed
Cma17g00805 Cma-Chr17:6344767 Cma09g00906 Cma-Chr9:4507821 6.92E-09 transposed
Cma01g01169 Cma-Chr1:8503318 Cma09g00906 Cma-Chr9:4507821 0 wgd
Cma13g00687 Cma-Chr13:6295714 Cma09g00906 Cma-Chr9:4507821 7.36E-95 wgd
Cma16g00815 Cma-Chr16:4512975 Cma09g00906 Cma-Chr9:4507821 0 wgd
Cma18g00332 Cma-Chr18:1779036 Cma09g00906 Cma-Chr9:4507821 0 wgd
Cma20g00649 Cma-Chr20:3000088 Cma09g00906 Cma-Chr9:4507821 2.79E-41 wgd
Cma03g00504 Cma-Chr3:4936160 Cma09g00906 Cma-Chr9:4507821 0 wgd
Cma07g00288 Cma-Chr7:1281330 Cma09g00906 Cma-Chr9:4507821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68808 PF07714 PK_Tyr_Ser-Thr 4.50E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00906 - - csv:101216184 1334.7