Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00913 ATGGGAGGAGGAGAAGTCGTTAGGGCGGCGGCGAAGATGGCCGGAGCCGGAGTTGTTAACGCCGGTTTCCGAGGATCATCGATGGTGCCTCAGTTTGGGCAATTTATTCGCAGCGCGTCGAGGGCATCGTCGGTTTCCGTCGGATCGTCTTCTCGGGTGCCGTCGGCGAAGGCCACTGCCGGCGCCGAGGTGGACGTTGTGCAAAAACCGACGCGGGAAATAGATGACTGGGAATTCGCCAATTTTGAGGACGATTTGGCCGTGGACGCCGCTGGACCTGAGCCGAGGATTGTGTTTGGGACGGTTCCTAGTTTTGAAGAGGCGAAGGAAGCTGCAGCAGAGGTGAAGGAGGCTTTGGATAGGGCATACTTGACTTCTTCACCAGAATCTGGTGGATCAAATCTGATTGTCTGTTCATACAGTAAGCCAGAATCCGAGTCTTGTTTATCCATTGAGGTAAGTTCACAGCCGCAGACTTCAGTGCCTCAGCATGCAATTCAAGCATTTAGGCTGCTCAAGGAAAGTGCTGAAGCTCAGACTGTTGTTGCCTCAATAGCCTCTGACCCCAATGTCTGGAATGCAATGTTGGGCAATGAAGCGCTTAAGAGCTTCTTGCAATCCCATCAGACCAACAAGGTACTCGAGTATCGTGAAGAACTATCGGAGGAGCTTGAAGAAGAGGCACCAATTGTGAACCATGCCGAGGAGTCGAGAAACGTCTTTGACGAGACGTTAGAATATATTACGACTTCAATTGATGACATGCTAGCTAATGCATCCAGTTTTCTTCAGAAAATATTTGGAGGATTTGAAGTTTCAGGAAATGACAAAGCAGCCTCTGGATTCTTTCCTACAGAGATAGCCATGGGATCATCAATTATGGGACTGGTTGTTCTCGTCATCGCCTTACTGGTTATGAAGCGGAATTAG 930 49.78 MGGGEVVRAAAKMAGAGVVNAGFRGSSMVPQFGQFIRSASRASSVSVGSSSRVPSAKATAGAEVDVVQKPTREIDDWEFANFEDDLAVDAAGPEPRIVFGTVPSFEEAKEAAAEVKEALDRAYLTSSPESGGSNLIVCSYSKPESESCLSIEVSSQPQTSVPQHAIQAFRLLKESAEAQTVVASIASDPNVWNAMLGNEALKSFLQSHQTNKVLEYREELSEELEEEAPIVNHAEESRNVFDETLEYITTSIDDMLANASSFLQKIFGGFEVSGNDKAASGFFPTEIAMGSSIMGLVVLVIALLVMKRN 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4552552 4555745 + CmaCh09G009130.1 Cma09g00913 300918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00913 309 Coils Coil 105 125 - -
Cma09g00913 309 PANTHER OS08G0179900 PROTEIN 3 308 - -
Cma09g00913 309 PANTHER OS08G0179900 PROTEIN 3 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00913 - - - csv:101218021 364.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01166 Cma09g00913 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01166 Cma-Chr1:8491944 Cma09g00913 Cma-Chr9:4552552 3.16E-126 wgd
Cma16g00834 Cma-Chr16:4739805 Cma09g00913 Cma-Chr9:4552552 2.97E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g390 . . . . Bpe09g00202 . . Bma13g01010 . . Cma01g01166 Cma09g00913 . Car09g00829 Sed01g3741 Cpe06g00734 Cpe02g00736 Bhi09g01968 Tan01g4480 Cmetu09g1115 . Hepe01g1329 Mch11g1132 . . . . . . . . . Cone9ag0117 . . Lsi04g01259 . Chy04g01033 . Blo07g00926 Blo10g00792 . Bda12g00879 . . . . . Cmo01g01221 Cmo09g00906 . . . Car16g00579 . . . . . . . . . Cla05g01558 Cam05g1665 Cec05g1670 Cco05g1710 Clacu05g1660 Cmu05g1553 Cre05g1665 . . . Cme04g00773
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007247 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00913 Cma_Chr09 FPKM 5.942548 7.95211 9.997571 9.24213 3.689801 4.444637 4.393895 20.604029 19.911917 20.894537