Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00916 ATGGATTCTCACCAGCTGTTTGGATTTGGGGTTAATAGTGCAGAATTTTCATATACATCTTCTTATTCCTCAGTTCCATCTTTACCTAATAGTTTGCTTGGATCTGTGAACTTCAACTTTAGAAATTCCCCTGTGTCATCGTCGCTATTTTTGTCGCAATTCGAATCGGATTCCTTTACGACGACGACTGTAAGTGATAGCCAGGATCAAAGGAATTCCCCGGATGATCTCTCGGGACTTAGCCCTTCGTGTAATTCGTCGTTCGAAACGAGTAGCTTTAATCGAATAGCTTCGTCGTATTTGGGATCAAATGCATTTGTTTATGAGGGTTGTTCAACTGAGAATATAAGCTATGCTTTGAAACAATTGGAGAGTGCTTTGATGGAACCTGATAATGAGGAAGTTGTGAACAAGCCTGATGAGAGTAGCAGGCCACAGATGATGGGGCAAAGACCGTACTCGTGGAGCCAAGATCAATGTGGTGGGTCGTCGTATGTTGTACAGTCTCAGATGTCACCGGTGTCGAGAAGCCAGCGTTCTGAAGAAGTTCGATTGGGGAAACGCCAGAAATCGATGGATGAACCAATGTTGCAGCAGGATGGATTGCCATCGGATAATCTTAAGAAGTTGCTGATTGCTTGTGCAAAAGCTTTAGCTGAGTACAGGATGGAGGATTTCGACAAATTGGTTGCTGCAGCACGAGGTGCTGTGTCTATCGGCGGTGAACCGATCCAACGTCTCGGCGCTTACATGGTCGAAGGACTGGTGGCGAGGAAAGAGGACTCGGGGGCGAATATATACCGTGCTCTAAACTGTAGAGAGCCTGCAAGTGATGATTTGCTTTCCTATATGCATATGCTTTATGAAATCTGCCCCTACTTGAAGTTCGGTTACATGGCAGCAAACGGGGCGATCGCCGAAGCCTGTCGAAACGAAGATCGCATTCACATTATAGACTTCCAGATTAGTCAAGGGACACAATGGTTAACTCTTCTTCAGGCACTTGCAGCTAGACCGAGTGGAGCTCCACATGTGAGGATAACTGGTATCGACGACCCTGTTTCTAAATATGCTCGTGGTGATGGGTTGGAGGTCGTAGAGAGTAGGTTGGCCGAGATCTCGAGAAAGTACGGAATAAAGGTAGAGTTTCATGGAGTACCTGTTTTTGCTCCAAACATCACGCGTGATATGCTCGACATCAGACCGGGGGAGGCTCTAGCTGTAAACTTCCCGTTGCAGCTACATCATACCCCGGACGAAAGTGTCGACGTGAACAATCCACGTGACGGGCTGCTAAGGCTGGTGAAGTCATTATCCCCAAAGGTTGTAACTTTGGTAGAGCAAGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTGTGGAAACATTAGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACTCTACCAAGAGACAACAAGAAGCGTATCAACGTTGAGCAACATTGTTTAGCAAAAGATATCGTTAACGTCATTGCTTGCGAGGGGAGGGAACGAGAAGAGCGACACGAGCTCTTCGGTAAGTGGAAATCAAGGTTGACAATGGCAGGGTTCCGCCAGTTCCCGTTGAGCTCTTATGTCAACTCCGTCATTAGAAGTCTTCTCAGGTGTTATTCGGAGCATTACACGCTCGTCGAAAAGGATGGAGCAATGCTGCTGGGATGGAAAAACAGGAACCTGATATCGGCCTCGGCATGGAATTGA 1734 46.48 MDSHQLFGFGVNSAEFSYTSSYSSVPSLPNSLLGSVNFNFRNSPVSSSLFLSQFESDSFTTTTVSDSQDQRNSPDDLSGLSPSCNSSFETSSFNRIASSYLGSNAFVYEGCSTENISYALKQLESALMEPDNEEVVNKPDESSRPQMMGQRPYSWSQDQCGGSSYVVQSQMSPVSRSQRSEEVRLGKRQKSMDEPMLQQDGLPSDNLKKLLIACAKALAEYRMEDFDKLVAAARGAVSIGGEPIQRLGAYMVEGLVARKEDSGANIYRALNCREPASDDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQISQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEVVESRLAEISRKYGIKVEFHGVPVFAPNITRDMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFVETLDYYLAIFESIDVTLPRDNKKRINVEQHCLAKDIVNVIACEGREREERHELFGKWKSRLTMAGFRQFPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWN 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4566670 4568403 - CmaCh09G009160.1 Cma09g00916 300921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00916 577 MobiDBLite consensus disorder prediction 130 200 - -
Cma09g00916 577 MobiDBLite consensus disorder prediction 143 179 - -
Cma09g00916 577 ProSiteProfiles GRAS family profile. 198 577 IPR005202 -
Cma09g00916 577 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 20 577 - -
Cma09g00916 577 MobiDBLite consensus disorder prediction 180 194 - -
Cma09g00916 577 Pfam GRAS domain family 207 576 IPR005202 -
Cma09g00916 577 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 577 IPR005202 -
Cma09g00916 577 MobiDBLite consensus disorder prediction 61 83 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01159 Cma09g00916 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00916 Cma-Chr9:4566670 Cma20g00670 Cma-Chr20:3070596 4.44E-173 dispersed
Cma01g01159 Cma-Chr1:8466405 Cma09g00916 Cma-Chr9:4566670 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35643 PF03514 GRAS 2.70E-127 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00916 - - csv:101216606 959.518