Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00924 ATGATCCCACGTTTTTTTGTAATTGTTCGAGAAATGGTATCCCCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTCATCGACGACATCCCTGTACCGGATGCGAATTTTCCGGTCACGAGTTCAAGTTTCTCCTGGGCTGTTCAGCCCTTAAACGGCTCCCCTGATGCCGGTAATTGGTTCATACGTCCTACTTATGACATGAAGATTGAGAGATTGTGGGGGAATGATTTGGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGGTGAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTTCGGAGGGATAGGCTCAATGACAGGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCCAAAACTGACAAGGCAGCGATTTTAGTCGATGCTGTTCGAATGGTGAATCAGTTGCGTAGTGAGGCTTGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAAAAGATTTAA 498 43.57 MIPRFFVIVREMVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIERLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4612273 4614722 + CmaCh09G009240.1 Cma09g00924 300929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00924 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 162 IPR036638 GO:0046983
Cma09g00924 165 SMART finulus 102 153 IPR011598 GO:0046983
Cma09g00924 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
Cma09g00924 165 CDD bHLH_AtILR3_like 104 165 - -
Cma09g00924 165 Coils Coil 144 164 - -
Cma09g00924 165 PANTHER BHLH TRANSCRIPTION FACTOR 12 165 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma09g00924 165 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Cma09g00924 165 PANTHER TRANSCRIPTION FACTOR ILR3 12 165 - -
Cma09g00924 165 Gene3D - 97 165 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00924 - - - csv:101215402 219.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01152 Cma09g00924 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00924 Cma-Chr9:4612273 Cma18g00230 Cma-Chr18:1237799 4.76E-27 dispersed
Cma01g01152 Cma-Chr1:8424445 Cma09g00924 Cma-Chr9:4612273 2.27E-66 wgd
Cma13g00706 Cma-Chr13:6387711 Cma09g00924 Cma-Chr9:4612273 1.01E-30 wgd
Cma16g00846 Cma-Chr16:4970716 Cma09g00924 Cma-Chr9:4612273 6.93E-51 wgd
Cma02g00147 Cma-Chr2:699901 Cma09g00924 Cma-Chr9:4612273 1.76E-25 wgd
Cma20g00638 Cma-Chr20:2971125 Cma09g00924 Cma-Chr9:4612273 9.79E-34 wgd
Cma04g00938 Cma-Chr4:4834656 Cma09g00924 Cma-Chr9:4612273 6.95E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g420 . Blo03g01435 Bda07g00338 . Bpe09g00195 Bpe08g01142 . Bma13g01026 Cmo16g00916 . Cma01g01152 Cma09g00924 . Car09g00840 Sed02g1399 Cpe06g00744 Cpe02g00749 Bhi09g01946 Tan01g4506 Cmetu06g0261 . Hepe01g1311 Mch11g1152 . . . . . . . . . . Cone14ag1119 Cone15ag1137 Lsi04g01245 . Chy04g01015 . Blo07g00920 Blo10g00804 Bda05g00737 Bda12g00887 Bpe11g00524 Bpe03g00805 Bma07g01316 Bma14g00357 . Cmo01g01205 Cmo09g00921 . . . Car16g00564 . . . . . . . . . Cla05g01539 Cam05g1646 Cec05g1652 Cco05g1689 Clacu05g1640 Cmu05g1535 Cre05g1645 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001164 4 2 3 5 4 2 3 2 2 2 2 2 4 2 2 4 2 4 3 2 3 2 3 2 2 2 2 2 2 2 78
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35644 PF00010 HLH 9.00E-09 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00924 Cma_Chr09 FPKM 1.419679 0.0 15.176767 22.555597 2.853874 2.918771 1.864222 7.14449 7.350488 9.667756