Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00926 ATGGCGAAGTACTCTTTAGGCTCCGAACCAGTGGTGGGTTCGTTAACTCCATCGAGGAAGAGGGAATACAGGGTCACCAACCGGCTTCAAGAGGGGAAAAGGCCTCTTTATGCTGTAGTTTTCAACTTCATCGACTCTCGCTACTTCAACGTTTTTGCCACTGTTGGCGGCAATCGGGTTACAGTTTATCAATGTCTTGAAGGGGGTGTTATAGCTGTGTTGCAGTCTTATGTCGACGAAGATAAGGATGAGTCTTTTTACACTGTAAGCTGGGCGTTCAACGTCGATGGCTCCCCATTTGTTGTTGCTGGTGGAATCAATGGTATAATCCGTGTTATTGATGCTGGCAGTGAAAAGATATATAAGAGTTTTGTTGGTCATGGTGATTCAATAAACGAAATCAGGACTCAGCCACTGAAACCATCACTCGTGATCTCTGCTAGCAAAGATGAATCTGTTCGATTATGGAATGTTCATACAGGTATTTGCATTTTGGTATTTGCTGGTGCAGGTGGTCATCGTAATGAGGTCTTAAGCGTGGATTTCCACCCATCAGATATTTATCGCATCGCAAGCTGTGGCATGGACAACACTGTAAAAATTTGGTCAATGAAAGAGTTCTGGACATACGTGGAAAAATCGTTTACCTGGACAGATCTTCCATCAAAATTTCCCACAAAGTATGTCCAGTTCCCAGTGTTCATAGCATCAGTTCATTCAAATTATGTTGACTGCAGTAGGTGGCTTGGTGATTTTATTCTTTCAAAGAGTGTTGACAATGAAATAGTGTTGTGGGAACCTAAAATGAAGGAGCAGTCACCTGGAGAGGGTACTGTGGATATTCTTCAGAAGTACCCTGTTCCTGAATGTGATATTTGGTTCATCAAGTTTTCCTGTGATTTTCATTACAATGCAGCTGCTATAGGAAATAGGGAAGGAAAAATTTTTGTTTGGGAACTTCAGTCAAGCCCCCCAGTTCTTATTGCAAGGCTGTCTCATGCCCAGTCGAAGTCTCCCATCAGACAGACAGCCATGTCCTTCGATGGAAGGAAAAGTTTTAGACTTCCCTGCCCCTGTTTCTTCTATGGAGTTCAGAGGGGCTGTTTCTTGCCTTTCAGTAATTGCTGGGGATTGAAGAAGAAACAGCCTGGGGTTATGATTAGAGTGGAATCTGAAGAATTGGTGATTCTTGTGTTTTGGGTATTGGGTGTTTTGTTCACTTTGATTCTGGGGATGAGGAATGATGGAGCTCTAAAGCAACAGGGATCCGTAGCTCGCTCTGGGCGGGCTCATAGTTTCATATCAAGTTCATTCCGGGCCTTCTCTAGTTACATGAAGAATGTTTCTTCTGGTGCATCGACTGTGGCACGGTCGGCTGCATCAGTGGCGTCTTCTTTGGTGGATAAGGATGGTGAAGCAAAAGGATCCCAGGTGAACTGGGCTGGCTTTGACAAGTTAGAGAGGGATGACAATGTCATTCGACGGGTGCTTCTGTTGGGTTTTCGTTCCGGTTTCCAGGTTTGGGATGTCGAGGAAGCGAATAATGTCCAAGTTCTTGTTTCTCGTTACGATGGTTCTGTTTCGTACATGCAAGTGTTACCCAGACCAGTACCATCAATGAGATCAGGAGATAAGTTTGCAGAAAGTAGGCCATTGCTAGTACTTTCGGCTTCTGGTTCCATTGCTGCTGCTTTTAACATACAGGATCAATTAGCCACTTCTGGCAATGCAGCCATCTCGAAGGGCCAGGAACTAGTAGATGGGAATTTTATGCCTACTTTTGTTAGATTTTATTCGCTGAAGTCTCAAACTTACGTGGATGAGCTCAAATTTAGATCGGTCGTTTATTCGGTGAGATGCAGTCCCTTGGTCGTTGCCATTTCTCTGGCAACTCAGATACACTGCATCAATGCTACAACTTTGGAGAAGGAACATATAATTCTTACAAATCCTGTTGTTTCTGGTTTTCCTGGATCTGGAGGAGGTATAGGTTATGGACCCCTTGCAGTCGGACCTAGATGGCTGGCTTATAGTGGTAGTCCGATCACGGTGTCAAATACAGGACGAGTGATTCCACAGCATTTAAAACCTTCTGCTAGCTTTTCTCATTCTTCTTCAAATGGAAGTTTAGTTGCTCACTATGCAAAGGAATCGAGTAAGCAACTTGCAGCAGGCATTGTTACGCTCGGCGACAAGGGTATTAAGAAACTATCGAGGTATTACTCCGATCTCTTACCCGAAAGCTACAATTCTCTTCAATCAGGTGCTCAAGGTATTGGAGCTCTTAATGGCCATGCGGCAGATACAGATAGTGTTGGAATGGTTATTGTGAAAGACATTGTCAGCAAAGTGATCATCACCCAGTTTAAGGCACATAAGAGCCCGATTTCTGCTCTATGCTTTAATCCGAGTGGCATCATCTTGGTAACGGCTTCTGTTCAGGGTCATAGCGTAAACGTTTTTAAAATTATGCCAAGTTCGCGCTCGGATTCATCTGCATCTTATAGCCATTTGTACAGGCTGCAAAGAGGCTTCACTAACGCAGTCATACAAGACATCAGTTTCAGCTATGATAGCAACTGGATCATGATTAGTTCCTCTAGAGGGACGAGCCATCTCTTTGCTATAAACCCTTCTGGAGGGCAGGTGAATATCCCATCTGCTGACATTAGCTCTATTACTAGAAATGGCGGTCCTGTAGTTCCTGCACGACAAATCGTTCGACAAGTTGATTCTGGTTCGCACGTGTCTAGTAAACAGAGCCAGTGTGCTACTGGTAGTCCACCTACACTTTCTCCAATTACTAGACTACACCATGGAAGTAATGGCTGGCGGGGCACTGTCAGTAGTGCTGCAGCAGCTGCAAGTGGTCGAGCGGGTATTGTTTTGGGAGCTATTGCTTCAACTTTCCATGAGTGCAAGGGAAATGCTTCACACATAGACAACAGATCGTCAGAGGCCAGGTACGACATATTAGTTTTTGCTCCATCTGGCAATATGATACAGTACGCATTGCGAGTCGGTTTAGATTCAACTATAGTCTTGCCAAGATCTAGCACAGCTCTTGAATTAGCCCCCGAGCTGGATGCAAGACTAGTGGTTGAACCTATCCAGAAATGGAATATATCTCAAAAGCCTAGCTGTCGAGCTCAAGATAATAGCATCGACATATACGGTGACAGCGGAGGTTTCGATTGCAAGAAAAATTATTGTGAAGAAATGAATGGGAACTCTATTGTTCTTGAAGCTAGTGGCACTGTCTTGAAGGCAGAGAAGACTTGTAGGGAGGAACAATATCACCTGTATATTTCAGAAGCGGAGCTGCAGATGCATGCTGCTCTTACTCCACTGTGGACAAAGCCTGAGATATATTTTCAAGTGATGGCAAGAGATGGAGTTGAAGGAGATGAAATAGATCGTTATGGAGAACTTGAAATCGAAAGGATTCCTACTCGTATGATCGAAGCTCGGTCAAAAGACCTGATTCCAGTTTTTGACCATCTTCAGCCGCCCAAATTTCCGCAGACAAGGTTGTTAAATAGTAGTAGCGACCCGAAATGTAGCCGACCTGAAAATGGAAGGCAATCATGGAGGAATGTCACGATTCCTCACGGCTCTGTTATCGGAAACGGACCCGAAGGAACTGGTAGGCATGGTTACAAGATGGTGACAGAAACCAAGGGCACTGTAAATGAACATGAATGCCCAAGGTCACAGACCCAGCTTAATAATGTAAATAATTGTACAGAGAGCTTAAGCATGGAGTCTCAACCCAAGTCTGTAAATAATCATAAAAGTGGCCTGGGATTGGAGAATCATTATGAAGACCACATATGTGATGAGCTTGAGTAG 3852 44.21 MAKYSLGSEPVVGSLTPSRKREYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAFNVDGSPFVVAGGINGIIRVIDAGSEKIYKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSFDGRKSFRLPCPCFFYGVQRGCFLPFSNCWGLKKKQPGVMIRVESEELVILVFWVLGVLFTLILGMRNDGALKQQGSVARSGRAHSFISSSFRAFSSYMKNVSSGASTVARSAASVASSLVDKDGEAKGSQVNWAGFDKLERDDNVIRRVLLLGFRSGFQVWDVEEANNVQVLVSRYDGSVSYMQVLPRPVPSMRSGDKFAESRPLLVLSASGSIAAAFNIQDQLATSGNAAISKGQELVDGNFMPTFVRFYSLKSQTYVDELKFRSVVYSVRCSPLVVAISLATQIHCINATTLEKEHIILTNPVVSGFPGSGGGIGYGPLAVGPRWLAYSGSPITVSNTGRVIPQHLKPSASFSHSSSNGSLVAHYAKESSKQLAAGIVTLGDKGIKKLSRYYSDLLPESYNSLQSGAQGIGALNGHAADTDSVGMVIVKDIVSKVIITQFKAHKSPISALCFNPSGIILVTASVQGHSVNVFKIMPSSRSDSSASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPSGGQVNIPSADISSITRNGGPVVPARQIVRQVDSGSHVSSKQSQCATGSPPTLSPITRLHHGSNGWRGTVSSAAAAASGRAGIVLGAIASTFHECKGNASHIDNRSSEARYDILVFAPSGNMIQYALRVGLDSTIVLPRSSTALELAPELDARLVVEPIQKWNISQKPSCRAQDNSIDIYGDSGGFDCKKNYCEEMNGNSIVLEASGTVLKAEKTCREEQYHLYISEAELQMHAALTPLWTKPEIYFQVMARDGVEGDEIDRYGELEIERIPTRMIEARSKDLIPVFDHLQPPKFPQTRLLNSSSDPKCSRPENGRQSWRNVTIPHGSVIGNGPEGTGRHGYKMVTETKGTVNEHECPRSQTQLNNVNNCTESLSMESQPKSVNNHKSGLGLENHYEDHICDELE 1283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4616438 4632757 - CmaCh09G009260.1 Cma09g00926 300931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00926 1283 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Cma09g00926 1283 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 117 157 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 834 875 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 67 114 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 160 203 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 229 266 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 278 319 IPR001680 GO:0005515
Cma09g00926 1283 SMART WD40_4 782 822 IPR001680 GO:0005515
Cma09g00926 1283 Pfam WD domain, G-beta repeat 122 157 IPR001680 GO:0005515
Cma09g00926 1283 Pfam WD domain, G-beta repeat 171 203 IPR001680 GO:0005515
Cma09g00926 1283 Pfam WD domain, G-beta repeat 787 816 IPR001680 GO:0005515
Cma09g00926 1283 SUPERFAMILY WD40 repeat-like 28 350 IPR036322 GO:0005515
Cma09g00926 1283 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 412 1233 IPR045142 GO:0006914
Cma09g00926 1283 MobiDBLite consensus disorder prediction 1172 1217 - -
Cma09g00926 1283 MobiDBLite consensus disorder prediction 1174 1203 - -
Cma09g00926 1283 MobiDBLite consensus disorder prediction 1250 1269 - -
Cma09g00926 1283 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Cma09g00926 1283 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Cma09g00926 1283 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 412 1233 - -
Cma09g00926 1283 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515
Cma09g00926 1283 SUPERFAMILY WD40 repeat-like 496 877 IPR036322 GO:0005515
Cma09g00926 1283 Pfam Breast carcinoma amplified sequence 3 926 1163 IPR022175 -
Cma09g00926 1283 MobiDBLite consensus disorder prediction 1250 1267 - -
Cma09g00926 1283 Gene3D - 763 927 IPR015943 GO:0005515
Cma09g00926 1283 MobiDBLite consensus disorder prediction 912 934 - -
Cma09g00926 1283 Gene3D - 19 353 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00926 - - - bhj:120085734 1405.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00926 Cma-Chr9:4616438 Cma17g01148 Cma-Chr17:7978657 2.03E-26 dispersed
Cma17g01107 Cma-Chr17:7768134 Cma09g00926 Cma-Chr9:4616438 9.97E-06 dispersed
Cma11g01114 Cma-Chr11:6256051 Cma09g00926 Cma-Chr9:4616438 1.26E-138 transposed
Cma01g01151 Cma-Chr1:8418264 Cma09g00926 Cma-Chr9:4616438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00926 Cma_Chr09 FPKM 14.673322 16.835888 21.189007 19.686462 10.127879 10.045447 9.939272 24.352467 21.694548 24.755657