Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00928 ATGGCGCCGGCAAGGCTCAAATATAAAGTAGAATCATTCTTATCTCACCTGGCATTGGCCATTTCAGAGAATGCTGCTCCTCTCTTTCTCTCTGTCACTCTTCTAAACCACAGAGCTGAAAAAATGGCAGGCAAAAGCATGTTTCGGTATGCTGATGGCTTCGACAAGTTTCTGATGTTTTTTGGGACTTTGGGCAGCATAGGAGATGGATCACAGATCCCTCTCACGATGTTCCTTCTTAAGGATGTAATCAATGCTTATGGAGACAAGAACAGTGGCTTGACAAACGATATGGTTGACAAGTTTGCACTGCGTCTACTTTACGCTGCAGTTGGCGTCGGACTTTCAGCCTTTGTGGAGGGATTGTGTTGGGCAAGAACAGCAGAGAGACAGACATCTAGGATGAGAATGGAATATTTGAAATCTGTGCTTAAACAAGAAGTTAGTTTCTTTGATACCCAAACCGGTTCGACGACTCACGAGGTTGTCTCCCTCATTTCCTCCGACGCCAGTTCAATCCAAGTCGCCTTATGTGAAAAGATACCTGACTGCCTTACTTACATGTCAACATTCTTCTTCTGCCACGTATTTGCCTTTATAGTATCGTGGAAATTCACCTTTGCAGTCATCCCGCTCTCGGCCATGTTCATTGGTCCAGGGCTTGTGTTCGGCAAGATTATGATGGACCTGATAATGAAAATGATTGAATCTTATGGTGTGGCTGGTGGGATTGCAGAGCAAGCAGTATCTTCAGTAAGAACTGTATATTCATACGTAGGAGAAAGGCAAACACTGGAAAAATTCAGCCAAGCACTCCAAAAAAGTATGGAATTTGGGATTAAGTCCGGTTTGGTGAAGGGATTGATGCTTGGAAGTATGGGAATCATTTATGCTGGTTGGGGCTTTCAAGCTTGGATTGGCACTTATTTGGTCACCGAGAAAGGAGAAAAAGGAGGCAATGTTTTTATAGCTGGTTTCAACGTTCTAATGGGAGGGCTGAGTATACTGAGTGCATTGCCTCATCTAACCTCGATCACAGAAGCAACATCTGCAACTGCTCGTATCCTTGAAATGATCGATCGTGTTGCTGAGACAGACAGAGAAGACAAAAAGGAGAAAGCTCTATCTCACGTGAAAGGAGAAATCGAATTTCAAAACGTATATTTTAGTTATCCGTCAAGGCCAGATACGCCTGTATTACGAGGATTCAATCTAAAGGTTCCAGCAGGGAAGAGAGTAGGACTCATAGGAGGAAGCGGATCTGGGAAGTCCACGGTTATCTCACTGCTTGAAAGATTTTATGATCCTACTGATGGAGAAATATTCTTAGATGGACATAAAATAAAAAGATTTCAGCTAAAATGGCTAAGATCTCAAATGGGTCTGGTGAATCAGGAACCTGTTCTATTTGCAACTTCAATAAAAGAGAACATAATATTTGGAAAAGATGGAGCTTCAATGGAACAAGTGATAAATGCAGCTAAAGATGCAAATGCACACGACTTCATCGTTAAGCTACCAGAAGGTTACGATACTCAAGTCGGTCAGTTTGGTTTCCAAATGTCTGGAGGTCAAAAGCAACGAATTGCGATAGCAAGAGCTCTTCTTCGGGACCCAAAAATACTGTTACTTGATGAAGCAACCAGTGCACTGGATGCACAATCTGAACGAATGGTACAGGAAGCAATTGATAAGGCATCAAAAGGAAGGACGTCGATCACCGTTGCACATCGTCTTTCAACAATACAAACGGCACATCAAATTGTAGTTCTTAAAGCTGGGCAAGTAATTGAATCGGGTTCACACGATGAGCTGATGCTGTTGAACAATGGACATGGTGGGGAGTATCTAAGGATGGTGCAGTTGCAGCAGATGGCAGTGCAGAATGAAACTTTCTACGATTCCAATATTGAAATGGATAGAAGATATCGCCATCGGATGAGTACTCCCACAAGCCCAATCAGTGTGAGATCCAGTGGATATAGTACTCCAGTATTATATCCCTTCAGCTCAGCATTGTCCGTCTCCATGGGAACACCCTACTCTTACTCCGTCCAGTTTGATCCCGATGATGAAAGCTTTGAAGAAGATAAAAAACATCCGGCTTATCCTTCTCCTTCCCAGTGGCGTTTACTGAAAATGAATGCACCGGAATGGGGACAAGCACTGCTTGGATGTTTAGGTGCTTTAGGCTCAGGAGCGGTGCAACCCATTAACGCGTATTGCGTAGGAGCACTCATATCAGTTTATTTTCGTGCTGATGAGCCCAACATTAAGTCTAAAGCCAGAAACTTGTCACTTATCTTCTTAAGCATTGGCATTTTCAACTTCTTAACAAATATCCTGCAACATTACAACTTTTCAATCATGGGAGAAAGACTAACGAAGCGGGTGCGTGAGAAAATACTCGAAAAGCTTATGACATTTGAAATTGGATGGTTCGATCAAGATGAGAACACAAGTGCAGCCATTTGTGCAAGGTTATCAACTGAAGCCAACATGGTCCGTTCCCTTGTTGGAGACAGAATGTCATTACTGGTCCAAGCAATTTTTAGTGCAGCCTTTGCTTACACTGTGGGACTTGTGCTCTCATGGAGATTAACTCTGGTGATGATTGCAGTACAGCCACTAGTCATTGGTAGCTTCTATGCAAGGAGTGTATTGATGAAGAGCATGGCTGAAAAATCCCGAAAAGCACAAAGAGAAGGCAGCCAACTTGCAAGTGAAGCTGTAACGAACCATAAAACTATCGTTGCATTCTCGTCTCAGAAAAAGATACTCGGGCTCTTTGCTGCCACCCTTAAAGCTCCTAAGGAAGAAAGTGCCAGACAGTCTTGGATATCTGGCCTTGGCCTATTCAGTTCCCAGTTCTTTAACACAGCTGCAACAGCTTTGGCCTACTGGTATGGTGGGAGGCTATTGACACAAAACATGATATCCTCAGAGCACATCTTCCAAGCATTCTTGATATTGCTATTCACCGCATATATCATAGCCGACGCTGGAAGTATGACTTCCGATATATCTAGAGGAAGCAATGCTGTTGGATCAGTGTTCGCAATCCTAGACAGGAAGACTGAAATCGATCCCGATCACAAATCAAGACGGGATCTCAAAAGACGGTTAAAGGGTAAAGTGGAGCTCAGGAGTGTTTCATTCTCATATCCAACAAGACCAGAACAGATAGTTTTAAGGGGACTGAGCCTTAAAATTGATGCAGGAAGAACAGTTGCCCTGGTGGGACAAAGTGGCTCAGGAAAATCTACTATTATTGGACTTATAGAAAGGTTTTATGACCCCTCAAGTGGGTCTATACACATTGACGAACAGGACATTAAGAACTACAATTTGAGATGGTTAAGGTCACAAATAGCATTAGTCAGTCAAGAGCCAACTCTTTTTGCTGGAACTATCAGAGAAAACATTGCCTATGGAAAAGAGGAAGCAGGGGAATCAGAGATCAGACAAGCAGCTGTTCTTGCCAATGCTCATGAGTTCATAAGTGGAATGAAAGATGAGTATAATACATACTGTGGCGAGAGAGGAGCGCAGCTATCAGGCGGGCAAAAGCAAAGAATCGCACTGGCAAGAGCGATCCTGAAGAACCCATCAATCCTGCTGCTAGATGAGGCAACAAGCGCGCTCGACAGCGTATCAGAGAATTTGGTGCAGGAAGCCCTAGAGAAGATGATGATAAACAGAACCTGCATAATCGTCGCCCACCGCTTATCGACGATTCAGAAAGCGAACACCATCGCCGTGATCAAGAACGGGAAAGTTGTGGAACAAGGATCGCACAATGAGCTGATTTCAATGGGGCGCCGTGGAGAGTACTATTCTTTGACAAAATCGCAGGCCGGAAACTTCCCTCCGCGCTGA 3879 43.77 MAPARLKYKVESFLSHLALAISENAAPLFLSVTLLNHRAEKMAGKSMFRYADGFDKFLMFFGTLGSIGDGSQIPLTMFLLKDVINAYGDKNSGLTNDMVDKFALRLLYAAVGVGLSAFVEGLCWARTAERQTSRMRMEYLKSVLKQEVSFFDTQTGSTTHEVVSLISSDASSIQVALCEKIPDCLTYMSTFFFCHVFAFIVSWKFTFAVIPLSAMFIGPGLVFGKIMMDLIMKMIESYGVAGGIAEQAVSSVRTVYSYVGERQTLEKFSQALQKSMEFGIKSGLVKGLMLGSMGIIYAGWGFQAWIGTYLVTEKGEKGGNVFIAGFNVLMGGLSILSALPHLTSITEATSATARILEMIDRVAETDREDKKEKALSHVKGEIEFQNVYFSYPSRPDTPVLRGFNLKVPAGKRVGLIGGSGSGKSTVISLLERFYDPTDGEIFLDGHKIKRFQLKWLRSQMGLVNQEPVLFATSIKENIIFGKDGASMEQVINAAKDANAHDFIVKLPEGYDTQVGQFGFQMSGGQKQRIAIARALLRDPKILLLDEATSALDAQSERMVQEAIDKASKGRTSITVAHRLSTIQTAHQIVVLKAGQVIESGSHDELMLLNNGHGGEYLRMVQLQQMAVQNETFYDSNIEMDRRYRHRMSTPTSPISVRSSGYSTPVLYPFSSALSVSMGTPYSYSVQFDPDDESFEEDKKHPAYPSPSQWRLLKMNAPEWGQALLGCLGALGSGAVQPINAYCVGALISVYFRADEPNIKSKARNLSLIFLSIGIFNFLTNILQHYNFSIMGERLTKRVREKILEKLMTFEIGWFDQDENTSAAICARLSTEANMVRSLVGDRMSLLVQAIFSAAFAYTVGLVLSWRLTLVMIAVQPLVIGSFYARSVLMKSMAEKSRKAQREGSQLASEAVTNHKTIVAFSSQKKILGLFAATLKAPKEESARQSWISGLGLFSSQFFNTAATALAYWYGGRLLTQNMISSEHIFQAFLILLFTAYIIADAGSMTSDISRGSNAVGSVFAILDRKTEIDPDHKSRRDLKRRLKGKVELRSVSFSYPTRPEQIVLRGLSLKIDAGRTVALVGQSGSGKSTIIGLIERFYDPSSGSIHIDEQDIKNYNLRWLRSQIALVSQEPTLFAGTIRENIAYGKEEAGESEIRQAAVLANAHEFISGMKDEYNTYCGERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMINRTCIIVAHRLSTIQKANTIAVIKNGKVVEQGSHNELISMGRRGEYYSLTKSQAGNFPPR 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4635160 4641647 + CmaCh09G009280.1 Cma09g00928 300933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00928 1292 CDD ABC_MTABC3_MDL1_MDL2 1046 1285 - -
Cma09g00928 1292 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1028 - -
Cma09g00928 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1046 1282 IPR003439 GO:0005524
Cma09g00928 1292 CDD ABC_MTABC3_MDL1_MDL2 382 623 - -
Cma09g00928 1292 Pfam ABC transporter transmembrane region 724 995 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00928 1292 Pfam ABC transporter transmembrane region 59 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00928 1292 SUPERFAMILY ABC transporter transmembrane region 710 1029 IPR036640 GO:0005524|GO:0016021
Cma09g00928 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00928 1292 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 49 1286 - -
Cma09g00928 1292 Gene3D - 1037 1289 IPR027417 -
Cma09g00928 1292 Gene3D - 380 636 IPR027417 -
Cma09g00928 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1010 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00928 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 623 IPR027417 -
Cma09g00928 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Cma09g00928 1292 Gene3D ABC transporter type 1, transmembrane domain 106 1019 IPR036640 GO:0005524|GO:0016021
Cma09g00928 1292 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 355 - -
Cma09g00928 1292 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524
Cma09g00928 1292 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 49 1286 IPR039421 -
Cma09g00928 1292 SUPERFAMILY ABC transporter transmembrane region 45 361 IPR036640 GO:0005524|GO:0016021
Cma09g00928 1292 Pfam ABC transporter 1064 1213 IPR003439 GO:0005524
Cma09g00928 1292 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Cma09g00928 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1041 1285 IPR027417 -
Cma09g00928 1292 SMART AAA_5 1073 1265 IPR003593 -
Cma09g00928 1292 SMART AAA_5 409 594 IPR003593 -
Cma09g00928 1292 ProSitePatterns ABC transporters family signature. 1185 1199 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00928 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101213474 2285.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00928 Cma-Chr9:4635160 Cma15g00308 Cma-Chr15:1429662 0 dispersed
Cma13g00934 Cma-Chr13:7392459 Cma09g00928 Cma-Chr9:4635160 6.55E-15 dispersed
Cma17g01304 Cma-Chr17:8783627 Cma09g00928 Cma-Chr9:4635160 1.00E-10 dispersed
Cma20g00298 Cma-Chr20:1459972 Cma09g00928 Cma-Chr9:4635160 1.94E-56 dispersed
Cma09g00928 Cma-Chr9:4635160 Cma04g02735 Cma-Chr4:18399890 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00928 Cma_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0