Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00935 ATGATCAACAGAACTGTATTCACTGCTTTGAAGAGATCGATTCTTTCATCGTCTTCGTCGCAATTACTCCCGTTTTTTTCCTCCTCCGCTTGTCGATCTGCTAGCACATTGGTTTTGGCGGAACACGATGGCGGATCTATCAATGCCGCTTCCGTTAGTGCTATAGCGGCTGCCGGTTCTTTGAGCAAAGACAGTTCGATTTCCGTCTTGTTGGCTGGCTCAGGGCCTTCGCTTCAGGAAGCTGCTGAACATGCTGCCTCTTGTCACCCATCTATTTCTCAGGTGCTTGTTGCTGATTCCGATACATTTACAAACCCCCTGGCAGAACCTTGGGCTCAATTAGTCCAATTGGTTCAACAGAGAAATGGATATTCTCATGTAATTGCGGCTTCAGGTTCCTTTGGGAAGAACATTCTTCCACGCGCTGCTGCTCTTTTAGATGTTTCTCCAGTTACCGATGTCGTTGCTATATCTGAATCTCGTCAATTCGTGAGGCCCATATATGCTGGCAATGCGCTTTGTACAGTTCGATACACCGGGGCTGACCCTTGTATGTTGACCATACGATCTACATCGTTCCCAGTGACCTCGAAATCAGCAGAGTCGACATCGAATAAGTCCCCTATAACTCAGGTCGATCTCTCATCGTTTGGTGGAGATTCTATTGGAAAATCTAGATATGTAAAGCAAACATCTCAGGAAGCAGAACGACCCGATCTTGCGAATGCACGTGTTGTTGTCACGGGAGGACGTGGTTTAAAGAGTGCTGAGAACTTCAAAATGATAGAGAAGCTCGCAGCAAAACTTGGTGCTGCAGTTGGTGCCACACGTGCTGCTGTTGATGCTGGATTTGTGCCCAATGATCTTCAGGTTGGACAAACTGGTAAAATTGTAGCACCAGAATTGTATATGGCTTTTGGTGTATCAGGAGCCATTCAACATTTGGCTGGGATCAGAGACTCTAAGGTTATTGTGGCTGTGAATAAGGATGCAGATGCACCAATATTTAAGGTTGCTGACTATGGACTCGTTGGCGATCTTTTCGAGGTTATACCAGAGTTGGTCGAAAAGCTACCCGAAAGTAAGTGA 1089 46.19 MINRTVFTALKRSILSSSSSQLLPFFSSSACRSASTLVLAEHDGGSINAASVSAIAAAGSLSKDSSISVLLAGSGPSLQEAAEHAASCHPSISQVLVADSDTFTNPLAEPWAQLVQLVQQRNGYSHVIAASGSFGKNILPRAAALLDVSPVTDVVAISESRQFVRPIYAGNALCTVRYTGADPCMLTIRSTSFPVTSKSAESTSNKSPITQVDLSSFGGDSIGKSRYVKQTSQEAERPDLANARVVVTGGRGLKSAENFKMIEKLAAKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGIRDSKVIVAVNKDADAPIFKVADYGLVGDLFEVIPELVEKLPESK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4668893 4675307 + CmaCh09G009350.1 Cma09g00935 300940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00935 362 CDD ETF_alpha 35 202 IPR033947 -
Cma09g00935 362 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 35 202 - -
Cma09g00935 362 Gene3D - 233 360 - -
Cma09g00935 362 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Cma09g00935 362 Gene3D HUPs 35 223 IPR014729 -
Cma09g00935 362 PIRSF Electra_flavoP_a 32 362 IPR001308 GO:0009055|GO:0050660
Cma09g00935 362 Pfam Electron transfer flavoprotein FAD-binding domain 239 319 IPR014731 -
Cma09g00935 362 SMART ETF_2 36 221 IPR014730 -
Cma09g00935 362 SUPERFAMILY DHS-like NAD/FAD-binding domain 236 358 IPR029035 -
Cma09g00935 362 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 22 360 IPR001308 GO:0009055|GO:0050660
Cma09g00935 362 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 22 360 - -
Cma09g00935 362 Pfam Electron transfer flavoprotein domain 36 214 IPR014730 -
Cma09g00935 362 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 302 328 IPR018206 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00935 K03522 fixB, etfA; electron transfer flavoprotein alpha subunit - csv:101217942 581.252
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00935 Cma_Chr09 FPKM 44.362297 47.890251 43.571671 41.807743 6.789247 6.135647 7.841313 55.738209 54.435333 56.837334