Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00945 ATGATCGCCACAATCCTCCTTCTCATCACCATCTTCCTCTATCTCAGGCTTAGAGCCACCTTCTTCTCCTCCGCGGAGGCCAAAAACCTTCCTCCGGGGCCGCTGGGGGTCCCATTTATAGGCCAGAGCCTAAGCCTTCTTCGAGCCATGCGAGCAAACTCGGCCGAGCAATGGCTGCAGCAGAGAGTGGCCAAGTATGGGCCAATTTCGAAGATGACCCTTTTCGGGAAACCGACGGTGTTTGTACATGGGGTGGCGGCGAACAAGGCGGTGGTGTTTTCGGGGGAGGAGGAGGCAGTGTCGAACAGGCAGACGGAGTCGTTGAGGAGGATCTTGGGAGAGAGGAATTTGACGGAGTTGAGTGGTGAGGATCATAAGAGGGTTAGAGGGGCATTGGTTTGGTTCTTGAGGCCTCAGAGCTTGAAAGGGTTTGTGGGGAAGATGGATGGGGAAGTTAGGAAGCATTTAAACTTGCATTGGCATGGCAACAAGGAAGTCATTGTAGCGCCATTGATGAAAACGCTAACCTTTGACATCATATGCTCTCTCCTGTTTGGGATTGAAGAAGGGCCAACAAGAAAGAGCATAATAGAATGCTTCAAAACAATGGTGGATGGGATTTGGTCTGTTCCAATCAACCTGCCATTCACAAGGTACAGCCATAGCCTCAACGCAAGTGCAAAAGTTCAACAGATACTGAAGCAGCTTTTGAAGGACAAGGCACAAAAAATGGAAGAAGAAGAAGAAGAAAAGGAAGAGGATAAGAACCTGATTACTTGTCTGCTTAGCATCAAGAACAAAGACAAAGAACAAGCTTTGAGTGAGGAGGAAATTGTGCACAATATCATCCTTCTATTGATTGCTGGACATGACACAACATCCATTTTGATTACTCTTATGCTTAGGGTTATGGCTACAAACCCAACTGTTTATGCAGCTGTTCTTCAAGAACATGAAGACATACATAGAAGCAAAGAATGTGGGGAGGCCCTCACTTGGGAAGATGTTTCCAAGATGAAGTACACATGGAGAGTAGCATTGGAGACTTTGAGACTTTTCCCACCTGTGTTTGGAGGGTTTAGAGTGGCTCTTAAAGACATTCAATTAGGTGGATACACTATTCCAAAAGGATGGCAAATATTTTGGGCGGCATCAATGACCCATTTGGACGAGAAAATATTCACAGACCCACAAAAGTTCAAACCAAGTAGATTTGATCAGAACCAGACGTCCATTCCACCACCCTTATCTTTCATCGCATTTGGTGGAGGACCCAGAATTTGCCCTGGCTATGAGTTTGCAAAGCTTGAAACTCTTGTCACAATTCATTACATAATCACTCAGTTCACTTGGAAGCTCTCTTCACAAGACTTCTTGACCAGAGATCCAAGCTTGATGCCCAACAAAGGGTTACCCATTCAACTTTACCCCAAATTATGA 1440 45.83 MIATILLLITIFLYLRLRATFFSSAEAKNLPPGPLGVPFIGQSLSLLRAMRANSAEQWLQQRVAKYGPISKMTLFGKPTVFVHGVAANKAVVFSGEEEAVSNRQTESLRRILGERNLTELSGEDHKRVRGALVWFLRPQSLKGFVGKMDGEVRKHLNLHWHGNKEVIVAPLMKTLTFDIICSLLFGIEEGPTRKSIIECFKTMVDGIWSVPINLPFTRYSHSLNASAKVQQILKQLLKDKAQKMEEEEEEKEEDKNLITCLLSIKNKDKEQALSEEEIVHNIILLLIAGHDTTSILITLMLRVMATNPTVYAAVLQEHEDIHRSKECGEALTWEDVSKMKYTWRVALETLRLFPPVFGGFRVALKDIQLGGYTIPKGWQIFWAASMTHLDEKIFTDPQKFKPSRFDQNQTSIPPPLSFIAFGGGPRICPGYEFAKLETLVTIHYIITQFTWKLSSQDFLTRDPSLMPNKGLPIQLYPKL 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4754604 4758200 - CmaCh09G009450.1 Cma09g00945 300950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00945 479 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS E-class P450 group I signature 175 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS E-class P450 group I signature 277 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 Gene3D Cytochrome P450 21 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 Pfam Cytochrome P450 31 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 Coils Coil 227 257 - -
Cma09g00945 479 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
Cma09g00945 479 PANTHER OS07G0520300 PROTEIN 7 476 - -
Cma09g00945 479 SUPERFAMILY Cytochrome P450 28 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma09g00945 479 PANTHER CYTOCHROME P450 26 7 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00945 - - - csv:101212103 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00945 Cma-Chr9:4754604 Cma19g01066 Cma-Chr19:8953994 5.93E-102 dispersed
Cma10g00341 Cma-Chr10:1591637 Cma09g00945 Cma-Chr9:4754604 5.76E-40 dispersed
Cma19g00908 Cma-Chr19:8223293 Cma09g00945 Cma-Chr9:4754604 1.63E-10 dispersed
Cma09g00945 Cma-Chr9:4754604 Cma10g00855 Cma-Chr10:4141943 1.17E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g494 . . Bda07g00357 Bda09g00396 . . . . . . . Cma09g00945 . Car09g00859 Sed10g2110 Cpe06g00761 . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00944 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00945 Cma_Chr09 FPKM 0.391667 0.727091 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0