Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00946 ATGGCTATTCATTTACGAACCCGAATCAGATTTCCAGATCACTTAAACCAAAAATCCAGTGGCTATTTCCTCTCGATTTGCCGATTTTTCTCCAAATCTCTCTCTGAAATCCCTTACGATCCGCCATTTTCTCCTGTTTCGAAGCTCCAAAAGGCGAAGAAGAAGAAGATCCAAGATGGAAATTCGAATTCAATCAAAAACCCTACTCTTCCTCTTCATTCCGATCTTCCTTTCGATTTCTTCTACTCCTACTCCGAGACCAATCCCTCGGTTAATCCGATAGGCTATCGAGAATCTCCCAAATTCTCGCCGTTCGGACCTGGCCGACTTGACCGCAAATGGACTGGAACTTCGGCTCCTTCAGAGGTGGAAGTGAAAATAAATGAAGTGTTAGAGGAGAGAAAACGGATTCTTGGAGATCCATTATCGGAGGAGGAAGTTGCAGAGCTTGTGGAACAGTATCGGCATAACAATTGTTCTCGGCAAATCAATCTTGGAAAAGGGGGAGTTACTCATAACATGTTGGATGATATACACAACCATTGGAGAAGGGCTGAAGCTGTGAGGATCAAATGCTTGGGAGTGCCAACTCTTGATATGAACAATATATGTTTCCATCTTGAGGACAAGTCTGGTGGGAAGATTATATATCGACATATCAATATCCTTCTGTTATACCGTGGTCGAAACTACGATCCCGAGAATCGACCAACTATACCTCTTATGTTGTGGAAACCTTATGCACCAATATATCCAAAGCTTGTGAAGAATGTGGCTGATGGCTTGTCATTTGAGGAAACAAAGGAAATGAGAGGCAGGGGATTGAATTCTCCTCCTCTTATGAAACTAACGAGGAATGGTGTATATGTTAACGTCGTGGAGAGAGTTAGAGAAGCTTTCGGGTTCGAGGAGGTGGTTCGACTAGATTGCACTCATGTTGGAAGCAGTGATTGCAAACGGATAGGCGTTAAATTAATGGATTTGGTACCTTGTGTACCCATTTTGTTCAAGGACGAGCAGATTATACTGTGGAGAGGGAAGAAAGATCGTGAAGAGGACGTGAACTCGTAG 1071 43.23 MAIHLRTRIRFPDHLNQKSSGYFLSICRFFSKSLSEIPYDPPFSPVSKLQKAKKKKIQDGNSNSIKNPTLPLHSDLPFDFFYSYSETNPSVNPIGYRESPKFSPFGPGRLDRKWTGTSAPSEVEVKINEVLEERKRILGDPLSEEEVAELVEQYRHNNCSRQINLGKGGVTHNMLDDIHNHWRRAEAVRIKCLGVPTLDMNNICFHLEDKSGGKIIYRHINILLLYRGRNYDPENRPTIPLMLWKPYAPIYPKLVKNVADGLSFEETKEMRGRGLNSPPLMKLTRNGVYVNVVERVREAFGFEEVVRLDCTHVGSSDCKRIGVKLMDLVPCVPILFKDEQIILWRGKKDREEDVNS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4759942 4761649 + CmaCh09G009460.1 Cma09g00946 300951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00946 356 ProSiteProfiles CRM domain profile. 260 356 IPR001890 GO:0003723
Cma09g00946 356 PANTHER CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL 14 354 - -
Cma09g00946 356 SMART CRS1_YhbY_2 142 227 IPR001890 GO:0003723
Cma09g00946 356 SMART CRS1_YhbY_2 262 345 IPR001890 GO:0003723
Cma09g00946 356 SUPERFAMILY YhbY-like 141 235 IPR035920 -
Cma09g00946 356 Gene3D - 141 238 IPR035920 -
Cma09g00946 356 Gene3D - 262 355 IPR035920 -
Cma09g00946 356 ProSiteProfiles CRM domain profile. 140 238 IPR001890 GO:0003723
Cma09g00946 356 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 14 354 IPR044599 GO:0000373
Cma09g00946 356 Pfam CRS1 / YhbY (CRM) domain 142 227 IPR001890 GO:0003723
Cma09g00946 356 Pfam CRS1 / YhbY (CRM) domain 264 345 IPR001890 GO:0003723
Cma09g00946 356 SUPERFAMILY YhbY-like 262 350 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00946 - - - mcha:111010593 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00946 Cma-Chr9:4759942 Cma14g02001 Cma-Chr14:14039978 3.65E-116 dispersed
Cma09g00946 Cma-Chr9:4759942 Cma10g00232 Cma-Chr10:1031940 4.20E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g497 . Blo03g01448 . Bda09g00398 . Bpe08g01126 . . . . . Cma09g00946 . Car09g00860 . Cpe06g00762 . . . . . . . . . . . . . . . . . . . Lsi04g01206 . . . . . . . . . Bma07g01300 . . . Cmo09g00945 . . . . . . . . . . . . . Cla05g01493 Cam05g1609 . Cco05g1638 Clacu05g1589 Cmu05g1492 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010205 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00946 Cma_Chr09 FPKM 5.094851 7.090416 8.503856 8.974009 8.509483 11.096181 10.168254 13.71354 13.825054 13.19421