Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00948 ATGGAAGGGAAGGTGATTCTTATGCTCTTGCTCTTCGTTTCAATCATCTCCACTTTCAGAGCTGATTATGTTCGTCCTCAACCACGCGAAACTCTGCATTTTCCATGGAGTTTTAAATCATCTTCTCAGCCACTGCAGGTGCATGTCTCCCTAGCAGGAGACGAGCATATGAGAGTCACATGGATTACTAACGATCATTCTGCTCCCTCTTATGTTGAATATGGCACATCACCTGGAGAATATACTTCTGTTTCTCAAGGAGAGAGCACCTCATATAGTTATATGTTGTACAAGTCAGGGAAGATACATCATACAGTAATCGGTCCTCTAAAGGCTGGGACGGTTTATTATTACCGATGTGGAGGGGAAGGTTCTGAGTTCCAGCTGAAGACACCTCCTTCCCAGTTGCCAATTACTTTTTCAGTGGCTGGGGACCTGGGTCAAAGTGGATGGACTAAATCAACACTAGAGCACATTGATCTGTGCAAATATGATGTTCATCTGCTTCCAGGCGACCTATCCTACGCTGATTACTTGCAGCATCGGTGGGACACATTTGGTGAGCTTGTGGAGCCGCTTGCAAGTGCGAGGCCATGGATGGTAACTGAAGGGAACCATGAAAAGGAGGACATATTTCTATTCAAGGCTCCATTTGACTCCTATAATGCAAGATGGAAGATGCCATTTGAGGAGAGTGGATCAAGTTCAAATCTCTATTATTCTTTTGAAGTTGCCGGAACTCATGTGATTATGCTTGGATCGTATACTGATTATGATGAATCCTCATATCAATATGCATGGTTGAAGGCTGATCTTGCAAAGGTGGACAGGGAAAGAACACCCTGGCTAGTAGTGTTATTCCATGTGCCATGGTACAATAGTAATAAAGCTCATCAAGGTGAAGGTGCAGGTATGATGGCTGTCATAGAGCCGTTGTTATATGCAGCTGGGGCAGACATAGTCATTGCTGGCCATGTCCATGCTTATGAACGCTCGAAACGTGTGAATGCTGGAAAATCTGATCCTTGTGGTGCTGTGCATATAACTATTGGTGACGGAGGAAACCGAGAAGGTTTAGCTCACAAGTACAACTCACAGCCTGAATGGTCAATTTTTCGGGAAGCTAGTTTCGGTCACGGGGAACTCAATATAGTGAACTCAACTCATGCGTTTTGGAGTTGGCATAGAAATGATGATGATGAACCAGTGAAGTCTGATCAAGCATGGATAACCTCATTGGTAGGTTCTGGTTGTGTTGCTGAGAAGAACCATCAACCGAAGAATTTCAGATGA 1293 44.24 MEGKVILMLLLFVSIISTFRADYVRPQPRETLHFPWSFKSSSQPLQVHVSLAGDEHMRVTWITNDHSAPSYVEYGTSPGEYTSVSQGESTSYSYMLYKSGKIHHTVIGPLKAGTVYYYRCGGEGSEFQLKTPPSQLPITFSVAGDLGQSGWTKSTLEHIDLCKYDVHLLPGDLSYADYLQHRWDTFGELVEPLASARPWMVTEGNHEKEDIFLFKAPFDSYNARWKMPFEESGSSSNLYYSFEVAGTHVIMLGSYTDYDESSYQYAWLKADLAKVDRERTPWLVVLFHVPWYNSNKAHQGEGAGMMAVIEPLLYAAGADIVIAGHVHAYERSKRVNAGKSDPCGAVHITIGDGGNREGLAHKYNSQPEWSIFREASFGHGELNIVNSTHAFWSWHRNDDDEPVKSDQAWITSLVGSGCVAEKNHQPKNFR 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4762645 4765783 - CmaCh09G009480.1 Cma09g00948 300953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00948 430 PANTHER ACID PHOSPHATASE RELATED 5 423 IPR039331 GO:0003993
Cma09g00948 430 SUPERFAMILY Metallo-dependent phosphatases 137 403 IPR029052 -
Cma09g00948 430 Pfam Calcineurin-like phosphoesterase 142 329 IPR004843 GO:0016787
Cma09g00948 430 Pfam Iron/zinc purple acid phosphatase-like protein C 345 400 IPR025733 -
Cma09g00948 430 CDD MPP_PAPs 137 412 IPR041792 -
Cma09g00948 430 PANTHER PURPLE ACID PHOSPHATASE 18 5 423 - -
Cma09g00948 430 Gene3D - 43 134 - -
Cma09g00948 430 Gene3D - 135 417 IPR029052 -
Cma09g00948 430 Pfam Purple acid Phosphatase, N-terminal domain 44 125 IPR015914 GO:0003993|GO:0046872
Cma09g00948 430 SUPERFAMILY Purple acid phosphatase, N-terminal domain 31 133 IPR008963 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00948 K22390 ACP7; acid phosphatase type 7 - csv:101213952 819.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01134 Cma09g00948 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01161 Cma-Chr3:7800779 Cma09g00948 Cma-Chr9:4762645 1.47E-172 dispersed
Cma07g00857 Cma-Chr7:3995369 Cma09g00948 Cma-Chr9:4762645 2.49E-100 dispersed
Cma09g00948 Cma-Chr9:4762645 Cma10g00514 Cma-Chr10:2337935 8.39E-96 dispersed
Cma01g01134 Cma-Chr1:8310729 Cma09g00948 Cma-Chr9:4762645 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g498 Blo03g00564 . . . . . . . . . Cma01g01134 Cma09g00948 . Car09g00861 . Cpe06g00763 Cpe02g00767 . . . . . . . . . . . . . . . . . . Lsi04g01205 . . . . . . . Bpe11g00545 . . Bma14g00341 . Cmo01g01185 Cmo09g00946 . . . Car16g00545 . . . . . . . . . Cla05g01492 Cam05g1608 . Cco05g1637 Clacu05g1588 Cmu05g1491 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008020 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00948 Cma_Chr09 FPKM 19.018518 19.957836 30.903234 32.275021 23.781471 27.098227 23.872885 41.858883 38.431801 40.224159