Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00950 ATGAGCGTGGTAGGTTTCGATATTGGAAATGAGAATTGTGTTATTGCTGTGTCGAGGCAACGAGGTATCGATGTTCTTCTTAATGAAGAATCACAACGAGAAACCCCTGCCGTGATATGTTTTGGGGAAAAGCAGCGGTTCTTGGGGTCAGCAGGTGCTGCTTCTGCAACAATGAACCCGAGATCCACAATATCGCAGGTAAAGAGATTGATTGGACGTAACTATGGTGACCCAGATGTTCGAAAGGATCTCAAAATGCTTCCTTTCGAAACATCTGAAGCCCTCGATGGCAGCATATTGGTTCACGTGAAATACTTAGGGGAGACTCATACATTTACTCCAGTTCAGATCATGGCAATGCTCTTTGCACATTTGAGAGATGTAGCCGAGAAAAACTTGGGAGCGCCATTTTCAGACTGTGTTATCGGTATTCCATCGTATTTTACGGATTTACAAAGACGTTTATATTCGAACGCAGCTGCTATTGCTGGTTTAAAGCCTTTGAGACTCATGCATGACTGTACTGCAACAGCCTTGAGCTATGGAATTTATAAAGCAGATATCTCAAATAAAGGTCCAATATATGTTGCCTTTGTTGATATTGGTCATTGTGATACTCAGGTCTCTATTGTATCGTTCGAACCCGGACATATGAGTATCATGTCGCATACATTTGATAGCGATTTAGGAGGTCGAGACTTCGATGAGCTTTTATTCAGCCATTTTGTTGCAGAGTTTAAGAAGAATTACGATATCGATGTAAACTCAAACGTCAAGGCTTCTATCAGATTGCGGGCGGCTTGTGAGAAGCTGAAGAAAGTTCTGAGTGCAAATTTAGAGGCACCTCTTAATATTGAATGCCTGATGGATGAGAAGGACGTTAAGGGATTTATCAAAAGAGAAGAATTTGAAAAGCTTGCTGCTGGGTTATTGGAGAGGATTAGTGTTCCTTGTACAAGAGCCTTAGTTGATGCAGGGTTAACTGTAGGAAGAATCCATTCGGTTGAACTTGTTGGATCGGGGTCGAGGATCCCTGCGATAACAAGGTTATTGGCTTCTGTTTTTAAGAAAGAACCGAGTCGTAAACTTAATGCTAGTGAATGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCGATGCTTAGCCCCGTTTTCCGGGTTAGAGAATATGAGGTTCAGGATTCATCCCCTTTCTCCATTGGCTTCTCATCAGATGCAGGACCAATTAGCTTGGGCTCAAATAATGTTCTATTTCCCAAAGGCCAACACATTCCAAGCACTAAAGTTCTCTCATTCCACCGCAACAGCTTGTTCCATTTAGAAGCATTCTACACTAATCTGGACGATTTACCTCCTGGCATGTCTTCAAAAATTGGTTGTTTTACAATTGGTCCTGTCCAAGGCTCAAACAACTCGAACGCGAGGATTAAAGTTAGAGTCCAGTTAAATTTCAACGGCATTGTTACGGTTGAATCAGCTACACTTGTAGAGGATAATATAGATGAACAAATACCAAGGAGAGACGTTACTCACTCGAATACAGAGAACATGGAGACCGAGTTTGTCGATTCTTCCCATTTTGAGTGTGATGTTTCAAGAAAAGTTAGGAGTACAAGGAGGATTGACATACCAGTTAGTGAACACATATATGGTGGAATGACAAAGGCTGAGCTCTCTGAAGCCCAACAAAGAGAGCTCCAATTGGCTCAACAGGACAAGAACATGGAACAAGCCAAAAATGAGAAGAATGCTTTGGAGTCATACGTCTATGAGATGAGGAATAAGCTTTTCAACACGTATCGGAGTTTCGCTAGTGATCAAGAGCGAGAAGGAATATTCTCAAGTCTCCAACGAACGGAGGAGTGGCTATATGAAGATGGAGACGATGAGACAGAGAGTGCTTATGCTTCTAAGTTAGACGACCTTAAGAAGTTGGTGGATCCTGTAATTATCCGATACGAAGATGAAGAAGCTAGAGCCGAAGCTAAAAAGCATCTGTTAAAGCGTATTGCCGACTATAGGAACTTTGGGGATTCAATTTCTCCTCACGTTCGAGCTTTGATCCTTGAGGAGTGCGACAGAGCAGAACAATGGCTAACAGAGACAAGCCAACAGCAAGAGCTGTTACCAAAAAACACTGACCCTTTACTATGGTCAAGCGAGATCAGAACTCGAGAAGACGATTTTGACAAGACATGCCGAAGGATCTTGGGACCTGTGCCTTCTCATACACATTCAGGAGATTCAGAGGAACCAAACCATCACAATTCTTCTGATAATCACTCTTAA 2286 42.48 MSVVGFDIGNENCVIAVSRQRGIDVLLNEESQRETPAVICFGEKQRFLGSAGAASATMNPRSTISQVKRLIGRNYGDPDVRKDLKMLPFETSEALDGSILVHVKYLGETHTFTPVQIMAMLFAHLRDVAEKNLGAPFSDCVIGIPSYFTDLQRRLYSNAAAIAGLKPLRLMHDCTATALSYGIYKADISNKGPIYVAFVDIGHCDTQVSIVSFEPGHMSIMSHTFDSDLGGRDFDELLFSHFVAEFKKNYDIDVNSNVKASIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLAAGLLERISVPCTRALVDAGLTVGRIHSVELVGSGSRIPAITRLLASVFKKEPSRKLNASECVARGCALQCAMLSPVFRVREYEVQDSSPFSIGFSSDAGPISLGSNNVLFPKGQHIPSTKVLSFHRNSLFHLEAFYTNLDDLPPGMSSKIGCFTIGPVQGSNNSNARIKVRVQLNFNGIVTVESATLVEDNIDEQIPRRDVTHSNTENMETEFVDSSHFECDVSRKVRSTRRIDIPVSEHIYGGMTKAELSEAQQRELQLAQQDKNMEQAKNEKNALESYVYEMRNKLFNTYRSFASDQEREGIFSSLQRTEEWLYEDGDDETESAYASKLDDLKKLVDPVIIRYEDEEARAEAKKHLLKRIADYRNFGDSISPHVRALILEECDRAEQWLTETSQQQELLPKNTDPLLWSSEIRTREDDFDKTCRRILGPVPSHTHSGDSEEPNHHNSSDNHS 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4772295 4779686 + CmaCh09G009500.1 Cma09g00950 300955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00950 761 MobiDBLite consensus disorder prediction 746 761 - -
Cma09g00950 761 Coils Coil 558 594 - -
Cma09g00950 761 MobiDBLite consensus disorder prediction 734 761 - -
Cma09g00950 761 Gene3D - 38 113 - -
Cma09g00950 761 Gene3D - 5 374 - -
Cma09g00950 761 Gene3D Actin; Chain A, domain 4 230 313 - -
Cma09g00950 761 CDD HSPA4_like_NDB 2 381 - -
Cma09g00950 761 PANTHER HSC70CB, ISOFORM G-RELATED 1 758 - -
Cma09g00950 761 SUPERFAMILY Actin-like ATPase domain 191 381 IPR043129 -
Cma09g00950 761 SUPERFAMILY Actin-like ATPase domain 1 184 IPR043129 -
Cma09g00950 761 Gene3D - 552 664 IPR029048 -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 2 15 - -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 30 42 - -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 140 160 - -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 332 348 - -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 363 383 - -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 388 407 - -
Cma09g00950 761 PRINTS 70kDa heat shock protein signature 472 488 - -
Cma09g00950 761 Pfam Hsp70 protein 3 651 IPR013126 GO:0005524|GO:0140662
Cma09g00950 761 Gene3D - 186 360 - -
Cma09g00950 761 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 1 758 - -
Cma09g00950 761 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 585 IPR029047 -
Cma09g00950 761 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 554 651 IPR029048 -
Cma09g00950 761 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 550 IPR029047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00950 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101219607 1337.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01133 Cma09g00950 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00687 Cma-Chr8:4222959 Cma09g00950 Cma-Chr9:4772295 0 dispersed
Cma09g00711 Cma-Chr9:3364102 Cma09g00950 Cma-Chr9:4772295 2.73E-75 dispersed
Cma09g00950 Cma-Chr9:4772295 Cma17g00811 Cma-Chr17:6379178 0 dispersed
Cma01g01133 Cma-Chr1:8301299 Cma09g00950 Cma-Chr9:4772295 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00950 Cma_Chr09 FPKM 5.50937 6.170019 5.343179 4.899141 7.821014 6.989945 7.872622 13.116378 11.479387 11.85075