Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00954 ATGAAATTCTTCAACCCTTTTCATCTCTCTATCAATTCTTCTTCTCATCTTACCATGTTGAGGTTGGTTATCGAGTTGAAGCACCACCTGGTTTTCGATAAAGCTCTTTGGTTCTTCGTCGAAGCTTTGAACGCGATCGCTTTCGCTTTGTTTCTATGCCTTCTTGCTCTAGTTGGCGCATCGGTGGGAACGGTGATCGGAGCTTTCAAAGGCCATGGCGCTGCCATAGGGGCTATAGTCGGTGCAGCCGCAGCCCTTCAGCTATTGAGCTGCCCCGAACCGGAGTATAGATATTCTTTGTCAAAGGAAGCAATAATGGAGAGTCTAATGAATGGGAAGGGGTTGATGAACTGGGCGAGCAACTTCTCGGAGTATATGTACCGAGAGATGTCGGAGTTCGTCGACGTCGCCGGAGAAAGCTGTGTGGAAGGGATGTCAATGGAGAGTGTTCAAAACTTGCCTATTTGTGAATATGATCATAGCAAGATGAAGAACTCCATTTCTTGTCCCATTTGCTTAGAGGAATTTGAAGTTGGAGAGTTTGGTAGGAAACTTCCAAATTGTGATCATTTTTTTCATGTGGATTGCATAGATCAATGGCTACGATTGAATGGATGTTGCCCATTTTGTAGAAAATTTTCTATGCCTCATGTTCATTTTTGTGCTACTTCTGTTGCAATGTACATTAGGTATGTTATGGACCACGATAAGCACAAGGCTGCCGAGCTAAGACAGGTCATAGCTGCAACAGTAGCAAGTGATCCAACAAGGTATTGTGAAGCGTTCCCCACTGTCTTGTGTGCAATTGAGCTTTCGATACTATTCGAGTATTATGGGCTTGAAATTGCAGCTTACGATATCCAGACCAAACGATGTGATTTGTATGGTCAGATGTCTCCATCTGAGGGAGCTCCAGAGGAATTTGATCAGACCATATTTTCTGTGAATCGGGACAGGACAATTGGTCCCATTGAAGGGCAGGCTCTTCATTTTGTTGAAGAACAGCAAAGGAAACGGAGATTCACCGACACGGCCAACTTCACGCTGCGATGTGGGGTTTGCCAAATCGGAGTCATCGGCCAGACGGAGGCTGTAGAACACGCAAAAGCCACTGGCCATGTCAACTTCCAAGAGTATAGATGA 1143 45.23 MKFFNPFHLSINSSSHLTMLRLVIELKHHLVFDKALWFFVEALNAIAFALFLCLLALVGASVGTVIGAFKGHGAAIGAIVGAAAALQLLSCPEPEYRYSLSKEAIMESLMNGKGLMNWASNFSEYMYREMSEFVDVAGESCVEGMSMESVQNLPICEYDHSKMKNSISCPICLEEFEVGEFGRKLPNCDHFFHVDCIDQWLRLNGCCPFCRKFSMPHVHFCATSVAMYIRYVMDHDKHKAAELRQVIAATVASDPTRYCEAFPTVLCAIELSILFEYYGLEIAAYDIQTKRCDLYGQMSPSEGAPEEFDQTIFSVNRDRTIGPIEGQALHFVEEQQRKRRFTDTANFTLRCGVCQIGVIGQTEAVEHAKATGHVNFQEYR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4795337 4801100 - CmaCh09G009540.1 Cma09g00954 300959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00954 380 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Cma09g00954 380 Gene3D - 264 345 - -
Cma09g00954 380 SUPERFAMILY RING/U-box 150 217 - -
Cma09g00954 380 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 25 212 IPR044523 -
Cma09g00954 380 SMART ring_2 169 210 IPR001841 -
Cma09g00954 380 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 212 - -
Cma09g00954 380 Pfam Ring finger domain 168 211 IPR001841 -
Cma09g00954 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 215 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00954 Cma-Chr9:4795337 Cma06g00134 Cma-Chr6:688196 2.47E-17 dispersed
Cma01g01131 Cma-Chr1:8282139 Cma09g00954 Cma-Chr9:4795337 3.72E-80 transposed
Cma01g01130 Cma-Chr1:8280131 Cma09g00954 Cma-Chr9:4795337 6.50E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00954 K13719 - bhj:120085514 280.411