Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00958 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGTAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGTTTGACATCGTCGGAATCTGAACCGCGGAGGAGTCTCCGTCGCCGGAATGTGAGGTACAACGTGGATTTTGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGGACGAGAGGAGGAGAGAGAAGAAGCTGAAGCTTGTTGTGAAGTTGAATCAAGGTAGAGATGGAACGCATCTATCTCCGGTGTCTCGACTTGCTAGGTCAGGAACGCGTGATTCACACGCGCCGGAGTATGGTTCGTCTGCGTCGGAATGGGAAGATGACGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGCGGTGGTGGTGGTGGTGGTGAAGAAGAAGATGAAGATGAAGATGAAGATTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGAAGGAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCTGGGACTCCCTCAGATCGATCATCCGGGTTACCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAGCTCCAGAAGAAGGATACTTATGGTGTTTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCCACCGTGAGGAATAAGTTGGCTAATGGATCATATTCAATTCTGGAACAGTTTGAGAGCGATGTTTTTCTTATATGCTCAAATGCAATGCAGTACAATTCACCAGAAACCATTTACCACAAACAGGCGCGTTCCATTCAAGAGCTAGCCAAGAAGAAGTTCGAGAGGGTAAGAATTGAAGTCGAACGCTCTGAGAAAGAGTTGAAATTGGAGCAGAGTACAAAATCGAATTCGTACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCGGGTGCAACCCTTGCTGCCATAGGAGATGTGCAGAATGGTTCGAATCCGATCCACGGTGTTAACTGTGAGATACCTAGCAATAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCTTTGATACTACTAATCAGGACAAGGCTGAAGAGCTCTTCTCAGGAAAGGGTATTCTAGGTAAATTGGGAAGAAAGACGTCTGTGCTTGATGACAACCGCCGTGCAACTTACAACATATCTAATTCACCTGTGCCACGATCCGAGTCAATATTTTCAACCTTCGAGGATGAAATAAGACAGCTTGTTCCGGTTGGGCTTCATGCGGAGTATGCCTATGCTAAGAGTCTGGCTCGATTTGCTGCAACACTCGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGTCGTACCTGTTGGATGTAAATTCGGACGTGGTTGGGTTGGAGAATACGAACCACTTCCAACTCCTATATTAATGTTTGAGAACCACAAGCAGAAGGAACTTGGTTTAAATCGTAACTTACATTCTACCAGAGAATTTAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCTAAGATGGAACATTCTCTTAGTGCACCATGTACAGAAGTGAATGAATTTGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTCCTTAGGTCTACCACCCCAAATCCTGGTCCAACTCCACAGCAAAACCTGCAGACCAACAATTTTACTGAGGTAGAGAAGGTTAAAAAGCAAGTCGAGGTAAATTCCTTGCCTTCACCAAGACAAAATAAAGTTGATCTTGGTGTAGAGAAGCAACTTCCAACCAATTCGAATATGACTACGTCTAGATCTAGAGATATGTCGTCGGTAAACTTAAATCTTGTTCAATCTGCGCCTTATAAACTGCCCGGTGTTAATGGCGTTGCAACTGGTGGACTAACTAATGGAAAATTCCCGAGCAATTGTTTGAATAGTCCACGAGCTGCTTTATCGTCTTCTAGCTTGCCTTCTCAAACAGCCCCTGTGGCAACTTCCCATGGACAGGGTCTGGGTCCTGGCAAGCCAGTACAATTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATGTGATTCTCCGCCAGTTTTGTCATCAGTCCCTTCTGCTATGAGAGACGATTCTAATAATGCTGCAGCAGTAGCTTCTCGTGCGTGGATGTCGATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATACTTCCACACCTAAAAGTCAAATCTCTGCAGATTCGCTGTATAATCCAGCTCGGGAATTTCATCCGCAAATGGCACGAGCATGGGGGGAGTTTCGTGCTGGAGGTAATCAGCTTCTATCTGAGAGGAACAGTTTCCCTATGCAGCCATTTGTTTCACAAGCTTCTCTTGTACCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTCCAAGCTGACATGTCTAAGTTCCAGTTGCAGTCGACATGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTTCCTCCCGACTTGAATATCGGTTTTCAATCACCCGGGTCTCCCGTGAAACAATCGTCTAGTGTTTTGGTCGACTCCCAGCAGCCAGACCTGGCCTTGCAACTTTAA 2682 46.01 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNVDFDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPVSRLARSGTRDSHAPEYGSSASEWEDDEPERKPLKKRRIGGGGGGGGEEEDEDEDEDYDDQIRGDENEDDDIDEERGRRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSILEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKLEQSTKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAAIGDVQNGSNPIHGVNCEIPSNNIDGQVEGSSSFFDTTNQDKAEELFSGKGILGKLGRKTSVLDDNRRATYNISNSPVPRSESIFSTFEDEIRQLVPVGLHAEYAYAKSLARFAATLGPIAWKVASQRIEQVVPVGCKFGRGWVGEYEPLPTPILMFENHKQKELGLNRNLHSTREFRKDGKPSDTPLPKMEHSLSAPCTEVNEFARGSTLDGKSSFLRSTTPNPGPTPQQNLQTNNFTEVEKVKKQVEVNSLPSPRQNKVDLGVEKQLPTNSNMTTSRSRDMSSVNLNLVQSAPYKLPGVNGVATGGLTNGKFPSNCLNSPRAALSSSSLPSQTAPVATSHGQGLGPGKPVQLMRMMSERAPKQENSSNQSSCDSPPVLSSVPSAMRDDSNNAAAVASRAWMSIGAGGFKQVRDTSTPKSQISADSLYNPAREFHPQMARAWGEFRAGGNQLLSERNSFPMQPFVSQASLVPNEQQLQNRSMIYPQLVQADMSKFQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4822916 4828886 - CmaCh09G009580.1 Cma09g00958 300963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00958 893 MobiDBLite consensus disorder prediction 32 48 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 665 682 - -
Cma09g00958 893 ProSitePatterns Bromodomain signature. 209 265 IPR018359 -
Cma09g00958 893 MobiDBLite consensus disorder prediction 869 893 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 1 15 - -
Cma09g00958 893 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 893 - -
Cma09g00958 893 SMART bromo_6 184 292 IPR001487 GO:0005515
Cma09g00958 893 MobiDBLite consensus disorder prediction 665 733 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 111 132 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 847 893 - -
Cma09g00958 893 CDD Bromodomain 191 287 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 703 730 - -
Cma09g00958 893 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 893 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 1 191 - -
Cma09g00958 893 Gene3D - 190 311 IPR036427 GO:0005515
Cma09g00958 893 PRINTS Bromodomain signature 220 236 IPR001487 GO:0005515
Cma09g00958 893 PRINTS Bromodomain signature 236 254 IPR001487 GO:0005515
Cma09g00958 893 PRINTS Bromodomain signature 254 273 IPR001487 GO:0005515
Cma09g00958 893 ProSiteProfiles Bromodomain profile. 203 273 IPR001487 GO:0005515
Cma09g00958 893 Pfam Bromodomain 197 277 IPR001487 GO:0005515
Cma09g00958 893 Coils Coil 280 307 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 133 159 - -
Cma09g00958 893 MobiDBLite consensus disorder prediction 552 574 - -
Cma09g00958 893 SUPERFAMILY Bromodomain 173 289 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00958 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1439.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00242 Cma-Chr8:1341906 Cma09g00958 Cma-Chr9:4822916 1.99E-09 dispersed
Cma09g00958 Cma-Chr9:4822916 Cma19g00798 Cma-Chr19:7712954 6.26E-86 dispersed
Cma01g01124 Cma-Chr1:8248303 Cma09g00958 Cma-Chr9:4822916 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g528 . . . . . . Bma10g00553 Bma13g01065 . . . Cma09g00958 Car01g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00958 Cma_Chr09 FPKM 23.131086 24.836218 17.962812 17.632113 27.696188 26.08687 27.86289 30.276478 27.264606 26.862486