Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00960 ATGGGTTTCTCCGGTCTCTGTTGTTCTGAAGCTGAGAAAATGAGTTTTGGAGTCGTACGGCGACGGATTGCGTCTGGAGGTTCTAATCTGTTTTCTGCGCAGTATTTGCGGGGAATTCGACCTTCCATTTCTGCAGGAAGAGTTCGCTCCGTTGCCGAAAAAGAGATTTTGCACCAGTGTAGGAGCTTTGGACATGTCAGAAAATTTTCTCACCTACTTTCACATGGTGGCCTTGCTAGTCCTCAATCTCTAAGGGTTGCTTTTGCAAGTATGCAGCAAAGTTCTATGATGCAATTGAATGGTCGGAACTTCTCTTCAGATAATGGGGACCTGCTTGATGTTGTCGTCCCTCCATTGGCCGAGTCTATTACTGATGGAACACTGGCAAAATTCCTGAAGAATCCGGGTGATAGAGTAGAATTGGATGAAGCAATTGCTCAAATTGAAACAGATAAGGTTACTATTGATGTCACTAGTCCTGGAGCTGGTGTTATTCAGAAGTTTGTTGCGAAGGAAGGAGATACGGTGGAACCAGGTACCAAGGTTGCTGTTATTTCAAAATCTGGTGAAGGTGTAGCTCATGCTGCTCCTTCCGAGAAGACATCGGAGAAAGCTGCATCTCAGGCTGCTCCAGTGGAAAAAATAGAAAAGCCTAAATCTGAAGCTATGGTCAGTGAGAAGCCTAAAGCACCATCTCCTCCACCTCCTAAGCGCTCAGCTACAGAACCCCAGCTTCCTCCCAAGGATAGGGAAAGACGAGTTCCAATGACAAGGCTTCGAAAGAGGGTTGCTACACGATTGAAAGATTCTCAAAACACATTTGCTATGTTGACGACGTTCAATGAAGTTGACATGACAAATTTGATGAAGCTTCGTTCTGATTACAAGGATGCGTTTGTTGAAAAGCATGGAGTCAAGTTGGGTCTTATGTCTGGATTTATTAAGGCTGCTGTCAGTGGACTTCAGAATCAACCTATTATTAATGCTGTGATTGATGGGGATGATATCATATACAGAGACTACATAGACATTAGCATAGCTGTTGGCACGCCTAAGGGTCTTGTTGTGCCAGTTATTCGAAATGCTGATACGATGAATTTTGCTGAGATAGAGAAGGAGATAAACACACTTGCAAAGAAGGCAAATGATGGTACCATATCAATTGACGAGATGGCTGGAGGTTCCTTCACCGTATCCAATGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCTATTATTAATCCTCCTCAGTCGGCAATCCTGGGAATGCACTCGATCGTTTCCCGTCCTGTGGTGGTTGAAGGCAACGTTGTCCCAAGGCCAATGATGTACATTGCTCTAACATATGACCATAGACTTATCGATGGGAGAGAGGCAGTGTTCTTTTTGCGCCGCATCAAAGATGTCGTAGAAGACCCACGGAGACTTCTCCTTGACATCTAA 1443 44.63 MGFSGLCCSEAEKMSFGVVRRRIASGGSNLFSAQYLRGIRPSISAGRVRSVAEKEILHQCRSFGHVRKFSHLLSHGGLASPQSLRVAFASMQQSSMMQLNGRNFSSDNGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTIDVTSPGAGVIQKFVAKEGDTVEPGTKVAVISKSGEGVAHAAPSEKTSEKAASQAAPVEKIEKPKSEAMVSEKPKAPSPPPPKRSATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTVSNGGVYGSLLSTPIINPPQSAILGMHSIVSRPVVVEGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4842077 4848315 + CmaCh09G009600.1 Cma09g00960 300965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00960 480 Pfam Biotin-requiring enzyme 114 185 IPR000089 -
Cma09g00960 480 PANTHER SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE, PUTATIVE-RELATED 16 480 - -
Cma09g00960 480 SUPERFAMILY Single hybrid motif 112 203 IPR011053 -
Cma09g00960 480 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 250 478 IPR001078 GO:0016746
Cma09g00960 480 ProSiteProfiles Biotinyl/lipoyl domain profile. 111 186 IPR000089 -
Cma09g00960 480 Gene3D - 236 476 IPR023213 -
Cma09g00960 480 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 213 479 IPR006255 GO:0004149|GO:0006099|GO:0045252
Cma09g00960 480 MobiDBLite consensus disorder prediction 243 257 - -
Cma09g00960 480 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 136 165 IPR003016 -
Cma09g00960 480 SUPERFAMILY CoA-dependent acyltransferases 250 479 - -
Cma09g00960 480 Gene3D - 112 188 - -
Cma09g00960 480 MobiDBLite consensus disorder prediction 228 242 - -
Cma09g00960 480 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 16 480 - -
Cma09g00960 480 CDD lipoyl_domain 113 185 - -
Cma09g00960 480 MobiDBLite consensus disorder prediction 189 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00960 K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] - csv:101204042 825.469
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01120 Cma09g00960 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02536 Cma-Chr4:17372769 Cma09g00960 Cma-Chr9:4842077 7.61E-06 dispersed
Cma09g00960 Cma-Chr9:4842077 Cma14g01254 Cma-Chr14:9939265 1.54E-35 dispersed
Cma01g01121 Cma-Chr1:8234585 Cma09g00960 Cma-Chr9:4842077 4.57E-23 transposed
Cma01g01120 Cma-Chr1:8231461 Cma09g00960 Cma-Chr9:4842077 0 wgd
Cma20g00608 Cma-Chr20:2840055 Cma09g00960 Cma-Chr9:4842077 1.15E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g536 . . . . Bpe09g00166 . Bma10g00562 Bma13g01068 . . Cma01g01120 Cma09g00960 Car01g00994 Car09g00875 Sed07g2678 Cpe06g00776 Cpe02g00780 Bhi09g01660 Tan01g4573 Cmetu01g1279 . . Mch11g1200 . . . . . . . . . . Cone14ag1156 . Lsi02g01894 Csa07g01104 . . Blo07g00897 Blo10g00841 . Bda12g00921 . Bpe03g00785 . . . Cmo01g01170 Cmo09g00960 . . . . . . . . . . . . . Cla09g01019 Cam09g1075 Cec09g1075 Cco09g1094 . . Cre09g1040 . . . Cme01g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003198 2 2 3 4 3 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00960 Cma_Chr09 FPKM 24.031719 19.081541 23.491116 23.013365 31.703295 27.355499 32.127274 24.565046 21.751719 25.561386