Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00961 ATGGAAGCGCCGCCGTTCTCCGTCGCTGTTTCTTCTTCTTCTTCCTCTTCTTCTCGGACTGTATTTCGGTCACTTTCATCATCGGCTCATACGAGTTCTCTCTTTTTTCTTCGCAATAATCATTACAAAACTCGTCATCTCAAAGTTAATTCCTCCGGTAAGTTCGCAGTTCGTGCCTCATTGGGTGGTGATTCAGTTGTAACTTTGCTGGATTATGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCACTCTGCAGTTATATTGAGAATGATCGCCCTTTTTTAGGTATTTGTCTTGGGCTTCAACTACTCTTCGAATCAAGCGAGGAGAACGGACCAGTAAAAGGTCTTGGCTTAATACCAGGCGTGGTTGGGCGTTTTGACTCTTCTAATGGTTTTACGGTACCCCATATTGGATGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATATTGGATGAAATTTCTAATCGTCATGTCTACTTTGTTCATTCTTACCGAGCTATGCCATCAGACAAGAACAAGGAGTGGATCTCTTCTACTTGCAGCTATGGCGACAGGTTTATAGCTTCAGTTAGAAGGGGAAACGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGAGGTAGGTCTGTCTGTCCTTAGAAGATTCTTGCTTCCAAAGTCAACCGTTACCAAGAAGCCTAATGAGGGAAAGGCATCTCGACTTGCAAAAAGGGTTATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGATCTTGTTGTTACCAAAGGGGACCAATATGACGTCAGGGAGCAAACAGAAGAAAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTTTGAATATAACTGGTTTTCGTGACTTCCCTCTAGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCGAACGGCAGGCACTATTCTAGCCTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATTGGCAGTGATGCTGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAGACAGGAAAGACCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAATCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCGATGATGTAGAGTTCAAGGTTATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAATATGCCTGGTATCAGTGTACAGTTAATGGAGGTCGAGAAGGTCGACCTATTGGAGCTTATGAGCTTGCAAAAGCTGTCGAGGAGCTTGGAGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATCTGGTAAAGCTGATATCAGATTCTGTGAGCATCCCCGTTATTGCCAGTAGTGGTGCTGGGTGTCCTGACCACTTCTCTGAGGTGTTCAACAAAACGAATGCATCTGCAGCCCTTGCAGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCACTTGTTTAAGGAAGGCATAGAAGTGAGAATGTAA 1788 44.24 MEAPPFSVAVSSSSSSSSRTVFRSLSSSAHTSSLFFLRNNHYKTRHLKVNSSGKFAVRASLGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCSYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFTVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKEWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGEVGLSVLRRFLLPKSTVTKKPNEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISKVYGNQAVVVSIDPRRVYLKSPDDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGCPDHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLFKEGIEVRM 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4848688 4858205 - CmaCh09G009610.1 Cma09g00961 300966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00961 595 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 283 594 IPR004651 GO:0000105|GO:0000107
Cma09g00961 595 Gene3D - 64 287 IPR029062 -
Cma09g00961 595 Gene3D Aldolase class I 288 595 IPR013785 -
Cma09g00961 595 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 67 265 IPR010139 GO:0000105|GO:0016763
Cma09g00961 595 CDD HisF 285 586 IPR004651 GO:0000105|GO:0000107
Cma09g00961 595 PIRSF IGPS_HisHF 64 595 IPR014640 GO:0000105|GO:0000107|GO:0016763|GO:0016833
Cma09g00961 595 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 78 595 - -
Cma09g00961 595 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 66 267 IPR010139 GO:0000105|GO:0016763
Cma09g00961 595 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 66 274 - -
Cma09g00961 595 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 78 595 - -
Cma09g00961 595 SUPERFAMILY Ribulose-phoshate binding barrel 282 594 IPR011060 -
Cma09g00961 595 Pfam Histidine biosynthesis protein 286 577 IPR006062 GO:0000105
Cma09g00961 595 CDD GATase1_IGP_Synthase 67 265 IPR010139 GO:0000105|GO:0016763
Cma09g00961 595 Pfam Glutamine amidotransferase class-I 69 265 IPR017926 -
Cma09g00961 595 SUPERFAMILY Class I glutamine amidotransferase-like 66 265 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00961 K01663 HIS7; imidazole glycerol-phosphate synthase [EC:4.3.2.10] - csv:101205184 1085.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01118 Cma-Chr1:8194586 Cma09g00961 Cma-Chr9:4848688 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g538 Blo03g00552 . Bda07g00369 . . . . . . . . Cma09g00961 Car01g00993 Car09g00876 Sed04g3225 Cpe06g00777 Cpe02g00781 Bhi09g01662 Tan01g4575 Cmetu01g2068 . . Mch11g1201 . . . . . . . . . . . . Lsi02g01893 Csa07g01105 . . . . . . Bpe11g00554 . . Bma14g00332 . Cmo01g01168 Cmo09g00961 . . . . . . . . . . . . . Cla09g01020 Cam09g1076 Cec09g1076 Cco09g1096 . . Cre09g1042 . . . Cme01g01017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002500 2 3 2 2 2 1 4 2 1 3 1 1 2 2 1 4 1 4 3 2 2 2 2 2 1 1 2 2 1 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00961 Cma_Chr09 FPKM 6.637138 8.415922 7.593004 8.143237 14.625235 14.014243 14.704078 8.244874 8.136824 8.227049