Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00962 ATGGTCTGGACGAGAGGCCCTGCCGTCGGCCGCGGCTCATCTGCCACCGTCTATTTGGCCACAGACGCCTCCTCCGGCCACCACTTCGCCGTCAAGTCCACCGACCTCTCTTCATCAGCGTTGTTGCAGAAGGAGCACGCTCTTCTCTCCAAATTGAGTTCCCCGTACCTTATCAACTGCCTAGGTTTCGACATTGAAACCGAAACCTTCAAGCTTCCGGTGTTCAATCTGTTCATGGAGTATTTGCCGCAGGGGACGCTGTGGGATGCGATTCAGAGAAACGGCGGCCGGATGGAGGAATCGACGATCCGAGTGTTTTCGCGCCAGATTTTGAAAGGATTGGAGTATCTTCACGCTAATGGATTGGCGCATTGTGATATCAAGAGCCGGAATCTTTTAATGAGTGATGCAGGTTTAAAAATCGCCGATTTAGGTTGTGCAAAATTTGTGGATGGAGTTTCCGGAAATGGAGTTAGGGATTTTTCTGGTTCGCCAGCGTTCATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATATTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGCGAACATCCGTGGGCGGATATAAAGGATCCGGTGTCGGCGTTGTATCGGATTGGATTTACCGGCGAGTTGCCAGAGGCTCCACGGTGGTTATCGGAGAGGGCGAGGGACTTTGTCGCTAAGTGTTTGCTAAAAGTCCCGAAAGAAAGATGGACTGCGAAACAGCTTCTTGAGCATCCGTTTCTTCAGGAATTTGATTCCGAGTCGGAAATTGAATCTTCGAGGATGAAAACGATGAATTCTTCTCCGAGGTGTGTTTTGGATCAAAGCTTTTGGGATTCAATGGAAGATTCGAAGACTCCATTGAAGGTAACGCATCAAGCTTCTTTGGAGGATTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCGTCCGATTGGGATTTGGAAGGGGATGATGGAGATTGGATTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTTCAGATACAGATGGAGAAGAAGAAGAAGAGCTGGAGATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTCATATGATGATGATTCTGGTATTATGAACAATGGGAGAGGAGGATTAGAAATGGAAATTGGGAGATTTGGAGGTTTCATTCCAGCTTTTAATTGA 1242 47.67 MVWTRGPAVGRGSSATVYLATDASSGHHFAVKSTDLSSSALLQKEHALLSKLSSPYLINCLGFDIETETFKLPVFNLFMEYLPQGTLWDAIQRNGGRMEESTIRVFSRQILKGLEYLHANGLAHCDIKSRNLLMSDAGLKIADLGCAKFVDGVSGNGVRDFSGSPAFMAPEVARGEEQGFPADIWAFGCTVIEMATGEHPWADIKDPVSALYRIGFTGELPEAPRWLSERARDFVAKCLLKVPKERWTAKQLLEHPFLQEFDSESEIESSRMKTMNSSPRCVLDQSFWDSMEDSKTPLKVTHQASLEDCPAERIRSLAGNLSSDWDLEGDDGDWILIRNNGVGGGSHGNGSVSSDFSDTDGEEEEELEILNLEFEENSVLFCSYDDDSGIMNNGRGGLEMEIGRFGGFIPAFN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4863606 4865010 - CmaCh09G009620.1 Cma09g00962 300967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00962 413 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cma09g00962 413 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00962 413 CDD STKc_MAPKKK 3 258 - -
Cma09g00962 413 Gene3D Transferase(Phosphotransferase) domain 1 3 317 - -
Cma09g00962 413 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 350 - -
Cma09g00962 413 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00962 413 SUPERFAMILY Protein kinase-like (PK-like) 6 302 IPR011009 -
Cma09g00962 413 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 350 - -
Cma09g00962 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cma09g00962 413 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01118 Cma-Chr1:8194586 Cma09g00962 Cma-Chr9:4863606 0 dispersed
Cma09g00962 Cma-Chr9:4863606 Cma11g01815 Cma-Chr11:12131750 5.98E-105 dispersed
Cma02g00175 Cma-Chr2:804772 Cma09g00962 Cma-Chr9:4863606 2.98E-103 wgd
Cma20g00605 Cma-Chr20:2831848 Cma09g00962 Cma-Chr9:4863606 7.62E-104 wgd
Cma03g00547 Cma-Chr3:5098993 Cma09g00962 Cma-Chr9:4863606 6.48E-90 wgd
Cma07g00322 Cma-Chr7:1405439 Cma09g00962 Cma-Chr9:4863606 6.82E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68810 PF00069 Pkinase 2.90E-53 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00962 K20716 - bhj:120084748 640.188