Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00968 ATGGCTACAGTCCCTGGTGAGGTCAAGAAAGAGTTTCCTATGGTAGGGGAGCATAACCTTAATGAAGGGTCTTCATTATCAGCAAGAGTCAAATGTGAGGAATCAAAAAAAGAAGACTCTGCCCATCAAACCTCATCAAGTGGAACTGCAGGTTCAATCAGTGGTAGCACATTTTCAGGTGCAGTAAAGAAGTCAAACAAACCACAGATAAAGGATGAAATCAAACAAGGAGAATCTGAAGCAGACAGAAGCTTTAGTGAGAAAAAACCTAGGGTGTTAGGTGACAGTGGGCCTTCTGTGGTTGAGTTGAGTGGATATAACTTCAAGCGGAAGGAATTCGACATTGAATATGACAATGATGCTGAGCATTTACTAGCAGATATGGAATTCAAGGACAATGACTCTGCAGCTGACCATGAACTTAAATTGAGGATTTTGCGCATATACTCAAAGAGGCTTGATGAAAGGAAACGCAGGAAGGAATTCATACTGGACAGAGATCTACTCTACTCCGACCCATTTGAAAAACATTTGTCTCCTGAAGAGAGGGCAATATGTCAGCCCTACAAGGTCTTCATGCGGTTCCACTCCAAGGAAGACCATGAAGAGCTTCTTAAGAATCTAATTGAAGAACATCGCATTGTGAAGAGAATACAAGAACTCCAGGAAGCTCGAGCTGCTGGATGTCGAACAATTGTCGAATCAAATAGGTTTCTTGATCAGAAAAGGAAAGAAACCAGAGACAGCAGCAAGAGAGTTAAGGAAAATAGTCAAGCTGTTCCAAGTGATGTATCAAATCATCTCAAAGGAGAACATGATGACAATCCCAGGGGCAGTGTAAAAGAATCTCCAAGATCGCGAGGCAGCGGCAAGGAACCATCTCCAGCAACACCATGGATTTCGAGCTCCATTCACGATTGGGACATCACGGGATTTGCAGGCGCTGATTTACTATCTGAAATGGAGAGGCGACTTTGCTGTGAGATAAGAATATTACCAGCTCATTATCTGAAAATGGTGGATATCATATCAGTTGAGATGTTAAAGGGCAGTGTTACAAAGAAATCTGATGTCCATGGTCTGTTCAAGGTGGATCCAAGTAAGGTGGAGGATAAATATGTGAAGTCCAAAATCACCGGTAACCTTTTCTCCGACCTGCCGCCTTCATTACCAAGATTTTTCTCCTCTGGTCGGAACTTCCGCCGTTGCATCTCTGCAATTTTGAAGCATTTGACTTCGTTTTCCATTTCACCGTTCCGGTATTCAACTTCTTCTCCTCAATGTCCTCCTCGAGAATCCTCTTCCGAGCTTCCAGGAGCCTGCACCGGAGTTCGCCGATCCTCATTGGCAACCAATCACGGAACTGCCGAACTTTTCCGATTCTCTACAGGCAATTTCACTGTCTCGTTGATGAGATCTCCGGCAAGGTTGAGGTTCTTAAGCCGTGTTTTCAAGTTTCATGCTCTCATTACTCTTTGTGAGATCTTTGATTTCTATTCAATCTGGTTTGAAAAGTACAGAGTTTTCGTAACTAAATTGAAAAATCGAAAGGTGATTTCATCTGGATACGAACGAACAATGAACTTAGTATCCTCTACTGCTTCCCATGAATCTTCTGAAAATGAAGAGGGGAGTGCAAAACAAGGTAATGTGAATTCTGAAGTGTCTGACCAAGCAGAGGAATTGAGTTCTACAATGGATTCCCATTCCACCAAATCAAAATCAAGACGACAGAGAAGGCGGACAATAAGAACTGCATTTTCCGATTCGGATTCTGAGAGCGACGAACAACCTTCCATGGATGATCTAGTAAAATCACTGGCGCGAAAGGAAGAGCTTCTGAAGTCTAAGCACAAAGAGATTGAGAAAATGCAAGAGAAAGTCCTCTGTTCTTATGCAGAAATGGAGAATGTTATGGACAGGACAAAACGTGAAGCAGAGAATTCAAAGAAGTTTGCCATTCAGCATATGGTTGACAGAATTTTGCAGAGTTTGCTTGATGTTGCTGACAACTTAGGAAGAGCTTCTTCTGTTGTTAAAGACAGTTTCTCAAAAATTAATGAATCTGAAGATCCAAGTGGAGCCGTAGCTCTTCTAAAAACCCTTTTAGAAGGGGTTGATATGACTGAGAAACAGCTTATGGAGCATTATGCTGTATTCCAAATACCGGATGGATCGAAGCCAGACGGCACTGTGGCTGTTGTGCTGAAGTCTGGATATATGCTACATGATCGAGTTCTTCGGCCAGCCGAGGTTGGTGTGACTCAAGCAGAGGAAGATAATCCGACGGATTAA 2295 42.7 MATVPGEVKKEFPMVGEHNLNEGSSLSARVKCEESKKEDSAHQTSSSGTAGSISGSTFSGAVKKSNKPQIKDEIKQGESEADRSFSEKKPRVLGDSGPSVVELSGYNFKRKEFDIEYDNDAEHLLADMEFKDNDSAADHELKLRILRIYSKRLDERKRRKEFILDRDLLYSDPFEKHLSPEERAICQPYKVFMRFHSKEDHEELLKNLIEEHRIVKRIQELQEARAAGCRTIVESNRFLDQKRKETRDSSKRVKENSQAVPSDVSNHLKGEHDDNPRGSVKESPRSRGSGKEPSPATPWISSSIHDWDITGFAGADLLSEMERRLCCEIRILPAHYLKMVDIISVEMLKGSVTKKSDVHGLFKVDPSKVEDKYVKSKITGNLFSDLPPSLPRFFSSGRNFRRCISAILKHLTSFSISPFRYSTSSPQCPPRESSSELPGACTGVRRSSLATNHGTAELFRFSTGNFTVSLMRSPARLRFLSRVFKFHALITLCEIFDFYSIWFEKYRVFVTKLKNRKVISSGYERTMNLVSSTASHESSENEEGSAKQGNVNSEVSDQAEELSSTMDSHSTKSKSRRQRRRTIRTAFSDSDSESDEQPSMDDLVKSLARKEELLKSKHKEIEKMQEKVLCSYAEMENVMDRTKREAENSKKFAIQHMVDRILQSLLDVADNLGRASSVVKDSFSKINESEDPSGAVALLKTLLEGVDMTEKQLMEHYAVFQIPDGSKPDGTVAVVLKSGYMLHDRVLRPAEVGVTQAEEDNPTD 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4907174 4914564 + CmaCh09G009680.1 Cma09g00968 300973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00968 764 Coils Coil 198 218 - -
Cma09g00968 764 Pfam GrpE 715 755 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma09g00968 764 Pfam GrpE 606 715 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma09g00968 764 MobiDBLite consensus disorder prediction 42 64 - -
Cma09g00968 764 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 715 756 IPR009012 GO:0006457
Cma09g00968 764 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 609 715 IPR013805 -
Cma09g00968 764 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 373 - -
Cma09g00968 764 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 373 IPR034318 GO:0003713|GO:0006357|GO:0035065
Cma09g00968 764 MobiDBLite consensus disorder prediction 530 569 - -
Cma09g00968 764 MobiDBLite consensus disorder prediction 530 601 - -
Cma09g00968 764 SUPERFAMILY Homeodomain-like 290 369 IPR009057 -
Cma09g00968 764 Gene3D - 602 715 IPR013805 -
Cma09g00968 764 Coils Coil 607 627 - -
Cma09g00968 764 MobiDBLite consensus disorder prediction 66 90 - -
Cma09g00968 764 MobiDBLite consensus disorder prediction 1 96 - -
Cma09g00968 764 MobiDBLite consensus disorder prediction 243 300 - -
Cma09g00968 764 Gene3D - 307 373 IPR036388 -
Cma09g00968 764 Gene3D Head domain of nucleotide exchange factor GrpE 716 755 IPR009012 GO:0006457
Cma09g00968 764 PRINTS GrpE protein signature 629 645 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma09g00968 764 PRINTS GrpE protein signature 735 754 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cma09g00968 764 MobiDBLite consensus disorder prediction 266 288 - -
Cma09g00968 764 CDD GrpE 622 754 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00968 K11314 TADA2A, ADA2; transcriptional adapter 2-alpha - csv:101218057 686.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00968 Cma16g00911 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00868 Cma-Chr6:4954516 Cma09g00968 Cma-Chr9:4907174 2.09E-73 dispersed
Cma09g00968 Cma-Chr9:4907174 Cma13g00361 Cma-Chr13:4144457 1.74E-96 dispersed
Cma09g00968 Cma-Chr9:4907174 Cma18g00616 Cma-Chr18:5437086 5.59E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g571 . . . . Bpe09g00153 . Bma10g00576 Bma13g01078 Cmo16g00946 Cmo06g00893 . Cma09g00968 . Car09g00883 Sed04g3701 Cpe06g00783 . Bhi09g01692 Tan01g3121 Cmetu01g0613 . Hepe01g1250 Mch11g1215 . Cla10g00480 Cam10g0467 Cec10g0487 Cco10g0475 Clacu10g0487 Cmu10g1315 Cre10g0720 Cone6ag0044 Cone9ag0052 Cone14ag1179 Cone15ag1191 Lsi02g01882 Csa03g00481 . Cme06g02842 Blo07g00884 Blo10g00848 Bda05g00699 Bda12g00933 . Bpe03g00773 . . Sed08g2981 . Cmo09g00969 . Cma16g00911 . Car16g00885 Cpe14g00736 . Bhi11g00582 Tan01g1745 Cmetu06g0127 . Hepe06g0017 . . Cla09g01032 Cam09g1087 Cec09g1086 Cco09g1107 . . Cre09g1052 Lsi05g00568 . Chy06g01841 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001938 1 4 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 3 2 2 2 2 2 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00968 Cma_Chr09 FPKM 3.791286 4.924829 8.80001 9.321847 7.109907 6.954289 8.136679 12.543201 11.002549 10.90754