Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00975 | ATGAGACCCACAGCAGTGCCCAATGATCTCGAGGAACGCCTTTCTTTCTTTTTATTGTTTCATTTTCTTCTTGATTTTCTCCCTCTAGGAATTTTCAAACCAATTTGCGCAGATCCAAATTACGACCCGATCTGCCATTGCTGCCGGTTGAATTCTCTTATTTTTCGAACGTCAATTCTGATTTCCAAACGGCGAATGGCGTATACTTTGGAATCATGGGTGAAGGAATACAATGAAGCCATGAAACTCTCTGAAGATATCAATGGCATGATTTCTGGGAGAAGTTCTGCTTCTGGACCAGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCGGAGAAAGAGATGAATCGTCGCAGGGATATGATAGCGAATTTGAGATCGAAAGCTAACCAGATGGCTTCGACTTTGAACATGTCTAACTTTGCTAACCGAGATAGCTTACTTGGTCCAGAAATAAAGCCAGCAGAGAATAGAACAGAAGGCTTAGACAACCGAGGCCTACTCGGTTTTCAACGACAAGTTATGAGAGAGCAAGATGAAGGCCTCGAGAAACTGGAAGGGACTATAATGAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTAGCCTTCACACGAGACTTATCGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGAGAGTGCAGAAGAGGCTGGCAATAATGAACAAGCGGACCAAGGGTGGATGCACTTGCATGTCAATGATTTCATCAGTGGTTGGAATTGTCGTTCTCATCACTCTCATATGGCTACTTATTAAGTATTTGTAA | 885 | 42.94 | MRPTAVPNDLEERLSFFLLFHFLLDFLPLGIFKPICADPNYDPICHCCRLNSLIFRTSILISKRRMAYTLESWVKEYNEAMKLSEDINGMISGRSSASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASTLNMSNFANRDSLLGPEIKPAENRTEGLDNRGLLGFQRQVMREQDEGLEKLEGTIMSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKRLAIMNKRTKGGCTCMSMISSVVGIVVLITLIWLLIKYL | 294 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4947413 | 4950747 | + | CmaCh09G009750.1 | Cma09g00975 | 300980 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00975 | 294 | Gene3D | - | 199 | 262 | - | - | |
| Cma09g00975 | 294 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 71 | 286 | - | - | |
| Cma09g00975 | 294 | PANTHER | SYNTAXIN | 71 | 286 | IPR045242 | - | |
| Cma09g00975 | 294 | SUPERFAMILY | SNARE fusion complex | 189 | 259 | - | - | |
| Cma09g00975 | 294 | SMART | tSNARE_6 | 193 | 260 | IPR000727 | - | |
| Cma09g00975 | 294 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 198 | 260 | IPR000727 | - | |
| Cma09g00975 | 294 | CDD | SNARE_Qc | 201 | 258 | - | - | |
| Cma09g00975 | 294 | Pfam | SNARE domain | 235 | 285 | IPR000727 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma09g00975 | Cma16g00924 | CCT | |
| Cma01g01111 | Cma09g00975 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00975 | Cma-Chr9:4947413 | Cma16g00924 | Cma-Chr16:7034135 | 6.38E-78 | dispersed | |
| Cma01g00944 | Cma-Chr1:5997055 | Cma09g00975 | Cma-Chr9:4947413 | 4.50E-10 | transposed | |
| Cma17g00042 | Cma-Chr17:187111 | Cma09g00975 | Cma-Chr9:4947413 | 7.37E-09 | transposed | |
| Cma01g01111 | Cma-Chr1:8131197 | Cma09g00975 | Cma-Chr9:4947413 | 5.28E-154 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00975 | K08503 | - | csv:101208669 | 389.808 |