Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00975 ATGAGACCCACAGCAGTGCCCAATGATCTCGAGGAACGCCTTTCTTTCTTTTTATTGTTTCATTTTCTTCTTGATTTTCTCCCTCTAGGAATTTTCAAACCAATTTGCGCAGATCCAAATTACGACCCGATCTGCCATTGCTGCCGGTTGAATTCTCTTATTTTTCGAACGTCAATTCTGATTTCCAAACGGCGAATGGCGTATACTTTGGAATCATGGGTGAAGGAATACAATGAAGCCATGAAACTCTCTGAAGATATCAATGGCATGATTTCTGGGAGAAGTTCTGCTTCTGGACCAGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCGGAGAAAGAGATGAATCGTCGCAGGGATATGATAGCGAATTTGAGATCGAAAGCTAACCAGATGGCTTCGACTTTGAACATGTCTAACTTTGCTAACCGAGATAGCTTACTTGGTCCAGAAATAAAGCCAGCAGAGAATAGAACAGAAGGCTTAGACAACCGAGGCCTACTCGGTTTTCAACGACAAGTTATGAGAGAGCAAGATGAAGGCCTCGAGAAACTGGAAGGGACTATAATGAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTAGCCTTCACACGAGACTTATCGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGAGAGTGCAGAAGAGGCTGGCAATAATGAACAAGCGGACCAAGGGTGGATGCACTTGCATGTCAATGATTTCATCAGTGGTTGGAATTGTCGTTCTCATCACTCTCATATGGCTACTTATTAAGTATTTGTAA 885 42.94 MRPTAVPNDLEERLSFFLLFHFLLDFLPLGIFKPICADPNYDPICHCCRLNSLIFRTSILISKRRMAYTLESWVKEYNEAMKLSEDINGMISGRSSASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASTLNMSNFANRDSLLGPEIKPAENRTEGLDNRGLLGFQRQVMREQDEGLEKLEGTIMSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKRLAIMNKRTKGGCTCMSMISSVVGIVVLITLIWLLIKYL 294
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 4947413 4950747 + CmaCh09G009750.1 Cma09g00975 300980
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00975 294 Gene3D - 199 262 - -
Cma09g00975 294 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 71 286 - -
Cma09g00975 294 PANTHER SYNTAXIN 71 286 IPR045242 -
Cma09g00975 294 SUPERFAMILY SNARE fusion complex 189 259 - -
Cma09g00975 294 SMART tSNARE_6 193 260 IPR000727 -
Cma09g00975 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Cma09g00975 294 CDD SNARE_Qc 201 258 - -
Cma09g00975 294 Pfam SNARE domain 235 285 IPR000727 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma09g00975 Cma16g00924 CCT
Cma01g01111 Cma09g00975 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00975 Cma-Chr9:4947413 Cma16g00924 Cma-Chr16:7034135 6.38E-78 dispersed
Cma01g00944 Cma-Chr1:5997055 Cma09g00975 Cma-Chr9:4947413 4.50E-10 transposed
Cma17g00042 Cma-Chr17:187111 Cma09g00975 Cma-Chr9:4947413 7.37E-09 transposed
Cma01g01111 Cma-Chr1:8131197 Cma09g00975 Cma-Chr9:4947413 5.28E-154 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00975 K08503 - csv:101208669 389.808