Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00976 ATGGGATTCTTGGTGACGTCCCTTATTTTCGCCGTGATTGGAGTCATCGCGTGTTTTTGCTCCTTAATTTGCTGTAACAGAGGAGCTTCGACTAATTTGTTTCACCTTACTTTGATAACTACTGCAACAATATGCTGCTGGATGATGTGGGCAATTGTATATCTTGCACAAATGAAGCCACTTATTGTTCCAATTCTGAATGACTCGGAGTGA 213 41.31 MGFLVTSLIFAVIGVIACFCSLICCNRGASTNLFHLTLITTATICCWMMWAIVYLAQMKPLIVPILNDSE 70
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4950327 4953943 - CmaCh09G009760.1 Cma09g00976 300981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00976 70 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT H 1 70 IPR008389 GO:0033179|GO:0046961|GO:1902600
Cma09g00976 70 Pfam ATP synthase subunit H 3 67 IPR008389 GO:0033179|GO:0046961|GO:1902600
Cma09g00976 70 PANTHER V-TYPE PROTON ATPASE SUBUNIT E2 1 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00976 K02153 ATPeV0E, ATP6H; V-type H+-transporting ATPase subunit e - csv:101208426 143.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01110 Cma09g00976 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01110 Cma-Chr1:8127523 Cma09g00976 Cma-Chr9:4950327 2.97E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g586 . . . . . . . . . . Cma01g01110 Cma09g00976 . . Sed07g2707 . . Bhi09g01702 Tan01g3133 Cmetu01g0078 . . . . . . . . . . . . Cone9ag0045 . . Lsi02g01876 . . . . . . . . . . . . Cmo01g01154 Cmo09g00975 . . . . . . . . . . . . . Cla09g01037 . . Cco09g1114 . . . . . Chy01g01060 Cme01g00993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008596 1 2 2 2 2 0 0 1 0 2 1 1 2 1 1 2 0 2 0 0 1 1 0 0 0 1 0 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00976 Cma_Chr01 FPKM 43.12764 48.145416 34.691772 37.431366 24.266457 23.821629 33.780609 23.701803 23.341644 36.164135
Cma09g00976 Cma_Chr09 FPKM 29.812544 33.552975 49.154415 47.653038 19.233637 21.144569 22.062984 22.963198 19.770451 37.070499