Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00980 ATGAGTTGCTGGAATAAATTTCCGGCGATGTGTTCTTCTTCTCGTACTTTCCTTCTTCTGTTTCCTCTGGTTCTTCACTCGTTCGTCGCGCTGGTATTTGCTCAGGGATCTAATAACACCTCGCCATGGCAGACTTTGAGTGGAGATCCTCCATTTGTTGTGGCTCGTGGTGGGTTTTCAGGGCTGTTTCCTGATTCGAGTGGATTTGCTTACAGTTTTGCAGTTATGGTTAGTGTTCCTGATGTGATCTTATGGTGCGATGTGCAATTAACTAAAGATGGAGTTGGAATTTGTTTCCCGGATCTGAGTTTTAACAATGCTACTGACGCTAAGGGGGTTTTGGGGGAAAACCGCAGCAGTGTGTATCTTGTTAATGGAGTACCTACTAAGGGATTGTTTACGGTCGATTTCAATGCGGAAGAACTGGCAAATTTACTCAAGGTATCTTTTCTCGGACGAACAGGTTTGATGGCAATCGGTTTGTTATTCTCACTCCTGAAGATGTGGTTAACCAGTTCAAGCCACCAGCATGATGCATTCTTCACACAACGAAACTTGAGCATGAGGAACTTTGTCCTTTCTGTATCCAGACGCATCAGTGTTAACTACATATCATCACCAGAGGTGGGATTTCTTAGAAGCATAGCATCGAGATTTAATCCCCGCACAACGAAGTTGATCCTTCGGGTTTTACAACCAACTGATATTGAGATTACCACCAATCAGACATATCAATCTCTCTTACGCAATCTCACCTTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCTAAGACTTATATATTGCCCATTAAGGATGGCTATATACAATCTGAAACCTCTCTTGTTTCTGACGCTCATAAAGCAAATCTGGAAATTTTTGCATCAGAGTTCTATAGTGACCTTCCACTAAGCTACAACTACAGTTATGATCCTGTTACTGAATACCTGTCTTACATCGACAATGGTAAATTTTCAGTTGATGGTGTGCTCACTGATTTCCCTATCAGTCCATCGTCAGCTATTGACTGTTTTGCTCATTTGGATAAGAATGCCAAAAGTCAAGCTAAACCTTTGGTTATTTCAAAATTTGGAGCTAGTGGAGACTTTCCTGGTTGCACAGATTTGGCGTATTCCAAGGCTATTTCTGATGGCGTTGATGTGCTTGACTGTCCAGTTCAAATGTCAAAAGACGGAATACCATTTTGCATGAGCTCAATTAATCTCATCGAGAGCACAACAATATCTCAAACATCATTCACTACTCTTTCTAAAAAAATTCCTGAAATTAGTCCTAACGACGGAATCTTTGCTTTTGACTTAACATGGGAAGAGATTCATGGCCTGACCCCGTCAATATTGAGCCCTTCGTCGAAGTTCACGTTGTTCCGAAACCCGAAGTCCCGAAACAGTGGGGAATTCTTAACGCTACCTGATTTCTTGGACTTGGCAAAGAATTCCAGCACTCTTTCTGGTGTCTTGATCCACATTGAGAATGCAGCTTACCTTGCTAAGGCGCAGGGTTTAAGTGTAATTGATGCGGTCATTGATTCCTTGAGCAAAACTGGTTATGATAATCAGACAGCACAGAAAGTATTGATTCAATCTCCAAGTAGCTCTGTTCTAATCAAATTTAAACAGGAAAAGAAAAAATACGAGCTTGTTTACAAAGTCGACGAGTCAATTAGTGATGTGCTCAATTCTACTGTTGTGGACATTAAGAGTTTTGCCAACTCTGTGACTGTCAGCAAAACCTCTGTCTTACCTGTAAATGAGCAATTTCTCATTGGACCTACAGATGTTGTGACGAAGCTGCAATCACTTAATCTCTCTGTATATGTGGAAACCTTCAGCAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCAGATGCAACAGTAGAGATCAACTCATTTGTTATGGGATCCGGCATTGATGGAGTCATCACTGACTTTCCAAAGACATCTGCTAGATATAAAAAGAACCGGTGTTTAACAATGAAAGTAGCACCAAGTTACATGAGCCCTGTCCAGCCTGGTAGCTTGATGCAGCTTATTACTGCAGACTACCAGCCTCCAAAGGAACGTCCAAGCCCGATTTTAGATGACAATGACGTAGCCGAGCCACCATTGCCTCCGGTTTCGAAGAAAGCCCCAGGACCTGCTGTGGATGATGGCTCTACAGCAAAACCTCCAACGTCCAAACCCAATGGACAACCCAAGCTTGGAGCTGGAACAGGCTTCTTGCTCTTGAACCTTGCCATACTCTGCCTTTCTCTTCTTCCATTCTGA 2292 42.28 MSCWNKFPAMCSSSRTFLLLFPLVLHSFVALVFAQGSNNTSPWQTLSGDPPFVVARGGFSGLFPDSSGFAYSFAVMVSVPDVILWCDVQLTKDGVGICFPDLSFNNATDAKGVLGENRSSVYLVNGVPTKGLFTVDFNAEELANLLKVSFLGRTGLMAIGLLFSLLKMWLTSSSHQHDAFFTQRNLSMRNFVLSVSRRISVNYISSPEVGFLRSIASRFNPRTTKLILRVLQPTDIEITTNQTYQSLLRNLTFIKTFASGILVPKTYILPIKDGYIQSETSLVSDAHKANLEIFASEFYSDLPLSYNYSYDPVTEYLSYIDNGKFSVDGVLTDFPISPSSAIDCFAHLDKNAKSQAKPLVISKFGASGDFPGCTDLAYSKAISDGVDVLDCPVQMSKDGIPFCMSSINLIESTTISQTSFTTLSKKIPEISPNDGIFAFDLTWEEIHGLTPSILSPSSKFTLFRNPKSRNSGEFLTLPDFLDLAKNSSTLSGVLIHIENAAYLAKAQGLSVIDAVIDSLSKTGYDNQTAQKVLIQSPSSSVLIKFKQEKKKYELVYKVDESISDVLNSTVVDIKSFANSVTVSKTSVLPVNEQFLIGPTDVVTKLQSLNLSVYVETFSNEFVSQAWDFFSDATVEINSFVMGSGIDGVITDFPKTSARYKKNRCLTMKVAPSYMSPVQPGSLMQLITADYQPPKERPSPILDDNDVAEPPLPPVSKKAPGPAVDDGSTAKPPTSKPNGQPKLGAGTGFLLLNLAILCLSLLPF 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4982997 4990532 + CmaCh09G009800.1 Cma09g00980 300985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00980 763 SUPERFAMILY PLC-like phosphodiesterases 50 336 IPR017946 GO:0006629|GO:0008081
Cma09g00980 763 MobiDBLite consensus disorder prediction 693 740 - -
Cma09g00980 763 ProSiteProfiles GP-PDE domain profile. 358 660 IPR030395 GO:0006629|GO:0008081
Cma09g00980 763 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 24 744 - -
Cma09g00980 763 Pfam Glycerophosphoryl diester phosphodiesterase family 365 655 IPR030395 GO:0006629|GO:0008081
Cma09g00980 763 Gene3D Phosphatidylinositol (PI) phosphodiesterase 356 659 IPR017946 GO:0006629|GO:0008081
Cma09g00980 763 Gene3D Phosphatidylinositol (PI) phosphodiesterase 50 338 IPR017946 GO:0006629|GO:0008081
Cma09g00980 763 CDD GDPD_SHV3_repeat_2 358 659 - -
Cma09g00980 763 ProSiteProfiles GP-PDE domain profile. 51 342 IPR030395 GO:0006629|GO:0008081
Cma09g00980 763 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 24 744 - -
Cma09g00980 763 SUPERFAMILY PLC-like phosphodiesterases 357 659 IPR017946 GO:0006629|GO:0008081
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01100 Cma09g00980 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00774 Cma-Chr3:6014474 Cma09g00980 Cma-Chr9:4982997 0 dispersed
Cma07g00505 Cma-Chr7:2179002 Cma09g00980 Cma-Chr9:4982997 5.67E-162 dispersed
Cma13g01073 Cma-Chr13:8111314 Cma09g00980 Cma-Chr9:4982997 6.62E-17 transposed
Cma18g00005 Cma-Chr18:12666 Cma09g00980 Cma-Chr9:4982997 7.26E-14 transposed
Cma01g01100 Cma-Chr1:8063260 Cma09g00980 Cma-Chr9:4982997 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00980 - - bhj:120086180 1176.0