Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g00981 | ATGCCGGAGAAATCGAGCCATAATGTTGTTTTAGAGCCTCGTTTGGTGGCTAGGAAGTTCCTGGCTAGGCCTCAGCATGAAGGGATGGGTGCCATTGTTCGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAGTTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATAGGAGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGTATTGTACATTCAGAAATGCCTGCAGCTCAAGGTACCCAAAAGGGCCTCCAGCTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAACCAAACTACCAAGAAGTTTCAAGCAAGGAAATCCCTGAAGCTACCAAAGATGGAGTGATAGTGAAAGTAATAGCCGGTGAGGCATTGGGAGCAAAGTCACCAATCTACACAAGAACACCAACCATGTACTTAGACATCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCCGATCCCATCGTCCTGGAACGCGTTCGTTTACGTTCTTGAGGGCGAAGGCATATTCGGCAGTTCGAAGGCGACATTGACGACAGCACATAACCTTCTTCTGCTCGGGTTCGGGGACGGTTTAGAGGTGTGGAATAAGTCAGCTAAGGCTCTCAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGGCTGTTGTGCAATTTGGTCCATTTGTGATGAACACTCAAGAGGAAATTGACCAAACAATTGATGATTTTGATAATTATACCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCAATTTCTCTTGGGTTCTAA | 906 | 46.03 | MPEKSSHNVVLEPRLVARKFLARPQHEGMGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKEIPEATKDGVIVKVIAGEALGAKSPIYTRTPTMYLDITLKPKAHLQQPIPSSWNAFVYVLEGEGIFGSSKATLTTAHNLLLLGFGDGLEVWNKSAKALRFILVGGEPLSEAVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAAISLGF | 301 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4993888 | 5000316 | + | CmaCh09G009810.1 | Cma09g00981 | 300986 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g00981 | 301 | CDD | cupin_pirin_N | 31 | 128 | - | - | |
| Cma09g00981 | 301 | PIRSF | Pirin | 12 | 292 | IPR012093 | - | |
| Cma09g00981 | 301 | PANTHER | - | 4 | 299 | - | - | |
| Cma09g00981 | 301 | Gene3D | Jelly Rolls | 148 | 253 | IPR014710 | - | |
| Cma09g00981 | 301 | SUPERFAMILY | RmlC-like cupins | 14 | 293 | IPR011051 | - | |
| Cma09g00981 | 301 | CDD | cupin_pirin_C | 176 | 252 | - | - | |
| Cma09g00981 | 301 | Gene3D | Jelly Rolls | 27 | 279 | IPR014710 | - | |
| Cma09g00981 | 301 | PANTHER | PIRIN-RELATED | 4 | 299 | IPR012093 | - | |
| Cma09g00981 | 301 | Pfam | Pirin C-terminal cupin domain | 179 | 283 | IPR008778 | - | |
| Cma09g00981 | 301 | Pfam | Pirin | 34 | 126 | IPR003829 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma09g00981 | Cma16g00937 | CCT | |
| Cma01g01099 | Cma09g00981 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00981 | Cma-Chr9:4993888 | Cma16g00937 | Cma-Chr16:7193013 | 1.12E-165 | dispersed | |
| Cma01g01099 | Cma-Chr1:8058082 | Cma09g00981 | Cma-Chr9:4993888 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g00981 | K06911 | - | csv:101216351 | 569.311 |