Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00988 ATGGGTTTCTTAGCTAACTTGTTCTTGCATGACCCTTCTTCTTCCTCTGTGAGCTCTGCTGCTCACTTTCTCCTTGAACCCATTTTAGCTCATGGCTTGTCTGGTTTGGCTCACTTGGTTTTGTTGCTTGTTCTATTCGTCTCATGGGTTTGCTTTAAGCTGAAGGCAGGCTATGGGGGATGTCAAAGAGAGACGAGGTGTTTGTACTTTAAGGGAATGTTCATATGCTGCCTCGTTATCTCTGTTTTCAATCTTGTTTTGTTTTCTCTTGGCTGCTTTTACTGGTATAGAAATGGATGGTCTGATGAAAATATGGTGACCCTTTTGGATTTTGGGTTGAAAGCACTTGCATGGAGCACGGTTTCCTTTTGTTTACATTCTCATGTTTCCAAAACTGGAAAGGCCAAGTTTGCTATTCATATTCATTTGAGAGTCTGGTGGGTTTCTTACTTAGCTGTTTCTTGCTACTGCCTTGCTGTGGACTCAGTTCTTTATGGACAAACTCATTTCCTGTCCATTAGATACTTGGTTTCTGATGTTATGTCGGTTGTCTCTGGTTTGTTGCTCATATATGTTGGGTTCTTTCGGAAGAGTGTGAGTGAACAAGACCCTCTCGAAGAACACCTTTTAAATGGTGAAACAAGCTCAACTACTCTCAGTAATGGCAGCGTCGATGGCATCGTCGAGCCGAAGAACTTGAAAGGAGATGAAACTGTGACCCCTTATGAGACTGCTGGAATTTTCAGTATTCTTTCATTCTCTTGGATGGGCTCTTTGATTGCAGCTGGAAATAAAAAGGCATTAGACCTTGAGGATATTCCTCAACTTGCAAGCTGTGATGCTGTTTCTCGGACCTTTCATATTCTCAGAAACAAGCTTGAGTCGGAGTGTGGAACAGTTAACAGAGTCACCACTTTTTCTATGGTCAAGGGTTTACTCTACTCAGCTTGGAAAGAAATAACCTTAACTGCTGCTCTTGCATTCATTTACGCATTGGCTACTTATGTTGGCCCCTATCTTATTGACACTTTTGTTCAATATCTCAACGGGCAGCGAGATTTCGAAAGTGAGGGCTATGTTTTGGTCTGTGTTTTTTTCCTAGCGAAACTCGTGGAGTGTCTCGCAAAGAGGAATTGGTTCTTTAGGGTACAACAAGTCGGAATAAGGATTCGAGCAGCATTGGTTGCAATGATCTACAACAAGGGTCTGACTCTTTCTTGCCAGTCGAGGCAACAGCATACAAGCGGAGAGATCATCAACTTCATGACTGTAGATGCCGAGCGGGTCGTTGATTTCAGTTGGTATATACACGATGTTTGGCTGGTGGTTTTGCAAGTTGGATTGGCCTTGTTGGTTTTGTATAAGAAACTTGGTCTTGCTTCCATTTCAGCTTTTGTTGCAACTATAGCTGTTATGTTGATAAATATCCCATTGGGAAAGTTGCAGGAGAAGTTTCAGGACAAGATAATGGAGTCAAAAGACCAAAGGATGAAGGCTACATCTGAAATCCTGAGAAATATGAGGATTCTTAAGCTTCAGGGATGGGAGATGAAGTTCCTATCTAAGATATCCGAACTTCGGAACATCGAGGCGGGATGGTTAAAGAAGTTCCTTTATACATTGTCAGCTACGACGTTTGTCTTTTGGGGTGCACCAACGTTTGTGTCTGTGGTCACTTTTGGGACATGTACGCTTGTGGGGATCCCATTAGAATCTGGCAAAGTATTATCCGCGCTTGCAACGTTTAGGATTCTTCAAGAACCAATCTACAATCTTCCTGACACGATCTCAATGGTTGTTCAAACGAAAGTTTCGCTTGATAGAATAGTGTCGTTCCTTCGTCTTGACGACTTGCAATCTGATATTATAGAGAGGCTTCCAAGGGGGAGTTCTACTACAGCAGTTGAGATTGTCAATGGGAACTTTTCGTGGGATGATTCGAGTTCTTCGAACCCGACGTTGCAAGATATCAATGTCAAAGTGGAACATGGCATGAGAGTAGCTGTTTGTGGTACGGTTGGGTCAGGCAAGTCCAGCTTGCTATCTTGCATTTTGGGAGAGGTACCTAAACTATCAGGGAACCTGAGGGTGTGTGGTAGTAAGGCTTATGTAGCTCAGTCGCCATGGATACAGAGTGGAAAGATTGAGGAGAATATACTTTTTAGCAAAGAAATGGACAGAGAAAGGTACAAGAGAGTTCTTGAAGCATGTTGTCTAGAAAAGGACCTTGAAATTCTTGCATTCGGCGACCAGACGGTAATAGGAGAAAGAGGAATCAATTTAAGTGGTGGACAGAAGCAAAGAGTTCAAATTGCTCGAGCCTTGTACCAAGATGCTGATATTTACTTGTTTGATGATCCCTTCAGTGCAGTTGATGCTCATACAGGTTCTCATCTCTTCAAGGAATGTCTCCTTGGTGTTCTGAATTCAAAAACAGTCATTTATGTCACTCATCAAGTAGAATTTTTACCAGCTGCAGATCTTATCTTGGTCATGAAAGATGGAAAAATTGTTCAAGCTGGAAAGTACGATGAAATTCTTCGTTCTGGAACCGACTTTATGACACTCGTTGGCGCACACGAGGAAGCATTATCCACCATTAATTCTGTGGAAGGAGATGCTTCTGGAAAATCTGCAAGCAAAGAAGATGGGTCTATGAGTAATACTAATGGCATTACATATGAGGAAGATAAAACAGATATACAAGATGGAAAGGGAGTTGACGAAACTAAGTCAAAAGGGCAGCTTGTACAAGAAGAAGAAAGAGAGAAAGGAAAAGTTGGATTTCCAGTGTACTGGAAATATACCAAGTATGCTTATGGTGGAGCTCTTGTGCCTATTATATTGCTTGCTCAGGTTCTCTTTCAGATTCTCCAAATTGGAAGTAATTACTGGATGGCATGGGCTACTCCTGTTTCAGATGATATGGAGCCTCCTGTTTCGACCTCTCGATTGATTATCGTCTATGTTGCTTTGGCCATTGGAAGCTCTTTGTGTGTCTTCTTGAGATCAGCCCTTCTTGTGACGGCTGGTTTTAAAGCAGCAACTGAACTCTTCGTTAAAATGCACACGAGCATCTTTCGGGCTCCCATGTCGTTCTTCGATTCTACTCCGAGTGGAAGAATCCTCAATAGAGCCTCCACAGACCAAAGTGCCATTGATATGGATATACCATTTCGAGTTGGGGCCTTCTGCTTCAGTCTGATTCAAATCCTAGGAACCATTGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTATCTTTATCCCTGTGATGGCTTTATGCATCTGGTATGAGCAATATTATATTCCATCAGCACGAGAGCTATCCCGGTTGATTGGAGTATGCAAAGCTCCAGGGATTCAACTTTTCTCCGAAACGATTTCTGGATCAACAACTATTAGAAGCTTTGATCAAGAGTCAAGATTCCAGGACACCAATATGAAACTGACAGATGCATACTCTCGACCCAAGTTCCACACAGCTGCAGCAATGGAATGGCTCTGCTTCCGTCTAGATTTATTGTCTTCGATCACGTTCGCCTCGTCTTTGATTTTCTTGGTATCTATCCCTGTGGGAGTCATTGATCCAGGCATTGCTGGCTTGTGTGTAACCTATGGACTTAACCTCAATATGTTGCAAGCTTCGCTAATATGGAACCTTTGCAATATGGAGAACAAAATTATATCAGTGGAGAGAATATTTCAATATACTTCAATCCCTAGTGAGCCACCTCTAGTTGTCGAGGAAAACCAACCGGATAGTAGCTGGCCAGCGTTCGGAGAAGTTGAACTTCACAACCTGCAGGTTCGCTATGCACCTCAGCTACCTCTTGTGTTGCAAGGTATTACATGCACTTTTCCAGGAGGAAAGAAAACAGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAGACACTTTTTCGGATAGTCAATCCCGTAGCAGGTCATATTGTGATAGATAACGTCAACATAACAACGATAGGACTTCATGATTTGCGGTCAAAACTCAGTATCATCCCTCAGGATCCTACTATGTTTGAAGGCACTGTGCGGAGCAATCTCGATCCCCTTGAAGAATATGCAGATGAAGACATTTGGGAGGCACTGGATAAATGCCTACTTGGAGATGAAGTGAGAAAAAAGGAAGGAAAGCTGGATTCAGCAGTTAGTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTGGTTTGCCTTGGTCGAGTGTTACTAAAGAAGAGTAAGGTGTTGGTCCTTGATGAAGCTACTGCGTCCGTCGATACAGCTACGGATAACTTGATTCAACAGACTCTACGACAACATTTTTCCGACTGTACCGTCATTACTATTGCACACCGAATAACCTCAGTCCTTGACAGTGACATGGTTTTGCTTCTAAGTCACGGACTCATTGAGGAGTATGACACCCCCACAAGATTGCTAGAAGATCAGTCATCCTCGTTTTCTCAACTAGTTGCAGAGTACACGCAAAGATCGGTTTCCAACATACTTGGAACCATGAGCAGAAGTAAATTAGATCGTGAATCAAAACTGGTGGGTTGA 4578 42.77 MGFLANLFLHDPSSSSVSSAAHFLLEPILAHGLSGLAHLVLLLVLFVSWVCFKLKAGYGGCQRETRCLYFKGMFICCLVISVFNLVLFSLGCFYWYRNGWSDENMVTLLDFGLKALAWSTVSFCLHSHVSKTGKAKFAIHIHLRVWWVSYLAVSCYCLAVDSVLYGQTHFLSIRYLVSDVMSVVSGLLLIYVGFFRKSVSEQDPLEEHLLNGETSSTTLSNGSVDGIVEPKNLKGDETVTPYETAGIFSILSFSWMGSLIAAGNKKALDLEDIPQLASCDAVSRTFHILRNKLESECGTVNRVTTFSMVKGLLYSAWKEITLTAALAFIYALATYVGPYLIDTFVQYLNGQRDFESEGYVLVCVFFLAKLVECLAKRNWFFRVQQVGIRIRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVVDFSWYIHDVWLVVLQVGLALLVLYKKLGLASISAFVATIAVMLINIPLGKLQEKFQDKIMESKDQRMKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSATTFVFWGAPTFVSVVTFGTCTLVGIPLESGKVLSALATFRILQEPIYNLPDTISMVVQTKVSLDRIVSFLRLDDLQSDIIERLPRGSSTTAVEIVNGNFSWDDSSSSNPTLQDINVKVEHGMRVAVCGTVGSGKSSLLSCILGEVPKLSGNLRVCGSKAYVAQSPWIQSGKIEENILFSKEMDRERYKRVLEACCLEKDLEILAFGDQTVIGERGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLNSKTVIYVTHQVEFLPAADLILVMKDGKIVQAGKYDEILRSGTDFMTLVGAHEEALSTINSVEGDASGKSASKEDGSMSNTNGITYEEDKTDIQDGKGVDETKSKGQLVQEEEREKGKVGFPVYWKYTKYAYGGALVPIILLAQVLFQILQIGSNYWMAWATPVSDDMEPPVSTSRLIIVYVALAIGSSLCVFLRSALLVTAGFKAATELFVKMHTSIFRAPMSFFDSTPSGRILNRASTDQSAIDMDIPFRVGAFCFSLIQILGTIAVMSQVAWQVFIIFIPVMALCIWYEQYYIPSARELSRLIGVCKAPGIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLVSIPVGVIDPGIAGLCVTYGLNLNMLQASLIWNLCNMENKIISVERIFQYTSIPSEPPLVVEENQPDSSWPAFGEVELHNLQVRYAPQLPLVLQGITCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVNPVAGHIVIDNVNITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCLLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLSHGLIEEYDTPTRLLEDQSSSFSQLVAEYTQRSVSNILGTMSRSKLDRESKLVG 1525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5043668 5051233 + CmaCh09G009880.1 Cma09g00988 300993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00988 1525 Gene3D - 618 876 IPR027417 -
Cma09g00988 1525 CDD ABC_6TM_ABCC_D2 945 1239 IPR044726 GO:0140359
Cma09g00988 1525 Pfam ABC transporter 654 788 IPR003439 GO:0005524
Cma09g00988 1525 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
Cma09g00988 1525 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 136 1507 - -
Cma09g00988 1525 SUPERFAMILY ABC transporter transmembrane region 312 613 IPR036640 GO:0005524|GO:0016021
Cma09g00988 1525 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1264 1498 IPR003439 GO:0005524
Cma09g00988 1525 CDD ABCC_MRP_domain1 635 836 - -
Cma09g00988 1525 Gene3D ABC transporter type 1, transmembrane domain 907 1245 IPR036640 GO:0005524|GO:0016021
Cma09g00988 1525 Gene3D ABC transporter type 1, transmembrane domain 291 617 IPR036640 GO:0005524|GO:0016021
Cma09g00988 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1256 1490 IPR027417 -
Cma09g00988 1525 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 322 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00988 1525 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 136 1507 - -
Cma09g00988 1525 MobiDBLite consensus disorder prediction 871 892 - -
Cma09g00988 1525 CDD ABCC_MRP_domain2 1262 1482 - -
Cma09g00988 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 858 IPR027417 -
Cma09g00988 1525 SMART AAA_5 1290 1483 IPR003593 -
Cma09g00988 1525 SMART AAA_5 663 836 IPR003593 -
Cma09g00988 1525 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 859 IPR003439 GO:0005524
Cma09g00988 1525 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 947 1227 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00988 1525 SUPERFAMILY ABC transporter transmembrane region 944 1246 IPR036640 GO:0005524|GO:0016021
Cma09g00988 1525 Pfam ABC transporter 1281 1429 IPR003439 GO:0005524
Cma09g00988 1525 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Cma09g00988 1525 Gene3D - 1247 1500 IPR027417 -
Cma09g00988 1525 Pfam ABC transporter transmembrane region 325 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma09g00988 1525 Pfam ABC transporter transmembrane region 947 1189 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00988 - - K05666 csv:101213946 2578.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01814 Cma-Chr4:9140791 Cma09g00988 Cma-Chr9:5043668 0 dispersed
Cma06g01218 Cma-Chr6:8121567 Cma09g00988 Cma-Chr9:5043668 2.73E-12 dispersed
Cma08g00046 Cma-Chr8:228611 Cma09g00988 Cma-Chr9:5043668 5.49E-08 dispersed
Cma09g00988 Cma-Chr9:5043668 Cma17g01368 Cma-Chr17:9146720 0 dispersed
Cma01g01091 Cma-Chr1:8027145 Cma09g00988 Cma-Chr9:5043668 1.41E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g630 . . . . . . . . . . . Cma09g00988 . . . Cpe06g00799 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00988 Cma_Chr09 FPKM 1.859503 1.666346 0.590612 0.795609 2.154502 2.399776 1.754203 0.270268 0.0 0.200689