Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00997 ATGACCACCCTCCCTCTCCTCCTCCTCCTCCTTCTTCTTCTCTTCGGTCTCTCCGGTCAGGCCTCCGGCGGTGGCGCTGCTGCTCCTGCTGCTGCTGCTTTTGCTGCTGGGGGAGGTGAGAGATATGCCATCAGTTGGGATGACTTGCGTGTGGATGTTCCGTCGCGGCAGGGTCTCAGCTCCGGAGTGCATGGCGGCGGGGTTCAGAATGGAACTGGAACTAGAATCATTGTGGTGGATAGAAGCTCCTCCGGCGACTCCACCACCGTGCAAGGGGCGGTGGATTTGGTTCCTCATAATAACAATCAGAGAGTTAAGATTTATATTCGTCCTGGCATTTACAGAGAGAAGGTATACATACCCATCACCAAGCCATATATTTCATTGATAGGAAACAGGAAACGAATGACAGACACTGTAATTACGTCGAACAGCAAAGCTTCCGACAAAGATGTCAGCGGACTCGAGCTCGGGACGTATAGAACAGCGACGGTTGCGATCGACTCCGACTACTTCTGTGCATCAGGAATCACATTCGAGAACACAGTGGTTTCAGCGCCTGGAGATAAGGGAAGACAAGCTGTGGCTCTAAGGATTTCAGGAGAGAAGGCTATGTTTTATAGAGTCAAGTTCTTAGGACAACAAGATACACTTTTGGATGATATGGGCACACACTATTTCTATCAATGTCACATTCAAGGGACTATTGATTTCATATTTGGTACGGCTAGATCACTCTATGAGCAATGTGTGATAACTTCCACGGCAGAGACCTTTGGAGCTATAGCAGCGCATCATCGGAGCTCGCCAGACGATGACACCGGGTTCTCTTTCGTGCGCTGCGTGATTAATGGAAGTGGCAGAGTACTACTGGGAAGAGCATGGGGGACCTATTCAAGAACAATATATTCTTACTGTTACATTGAAGATATGATAAGTCCGTTAGGATGGAGCGACTGGAGCGACCCATCAAGACAAAGGACAGCAGTTTTTGGGCAATATAGATGCAGGGGCAGTGGAGCTAACACAAAAGGTTGGGTGCCATGGGCAAGGACTTTCACCTCCGAGGAAGTGAGACCTTATGTAGATAGGAACTTCATCAATGGAGAACAATGGCTTAACCTATGA 1128 48.76 MTTLPLLLLLLLLLFGLSGQASGGGAAAPAAAAFAAGGGERYAISWDDLRVDVPSRQGLSSGVHGGGVQNGTGTRIIVVDRSSSGDSTTVQGAVDLVPHNNNQRVKIYIRPGIYREKVYIPITKPYISLIGNRKRMTDTVITSNSKASDKDVSGLELGTYRTATVAIDSDYFCASGITFENTVVSAPGDKGRQAVALRISGEKAMFYRVKFLGQQDTLLDDMGTHYFYQCHIQGTIDFIFGTARSLYEQCVITSTAETFGAIAAHHRSSPDDDTGFSFVRCVINGSGRVLLGRAWGTYSRTIYSYCYIEDMISPLGWSDWSDPSRQRTAVFGQYRCRGSGANTKGWVPWARTFTSEEVRPYVDRNFINGEQWLNL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5088741 5091114 + CmaCh09G009970.1 Cma09g00997 301002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00997 375 Pfam Pectinesterase 77 369 IPR000070 GO:0030599|GO:0042545
Cma09g00997 375 SUPERFAMILY Pectin lyase-like 75 374 IPR011050 -
Cma09g00997 375 PANTHER PECTINESTERASE QRT1 41 375 - -
Cma09g00997 375 ProSitePatterns Pectinesterase signature 2. 232 241 IPR033131 -
Cma09g00997 375 Gene3D - 72 375 IPR012334 -
Cma09g00997 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 41 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00997 Cma-Chr9:5088741 Cma15g01122 Cma-Chr15:7148399 1.72E-93 dispersed
Cma09g00997 Cma-Chr9:5088741 Cma02g01541 Cma-Chr2:8751985 4.05E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00997 K01051 - csv:101209316 563.918